Escherichia coli PA9 |
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Putative Escherichia coli PA9 RM systems
Ref: Eppinger,M. et al. Genome Announc 1 (2), E0013412 (2013)
REBASE ref # 15767
Contig set: 5,420,890 bp
GenBank #: AKLE00000000 (NZ_AKLE00000000)
REBASE acronym: EcoPA9
Org_num: 10435
All begin ECPA9_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 68 | endoribonuclease symE | |||
| 69 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoPA9ORF70P |
| 70 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.EcoPA9ORF70P |
| 71 | R | EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | EcoPA9ORF70P |
| 72 | 94 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1980 | lipoprotein | |||
| ??? | M | M.EcosPA8ORF27255P (100% identity) | M.EcoPA9ORF1982P | |
| 1985 | 41 aa hypothetical protein | |||
| 5759 | 41 aa hypothetical protein | |||
| 5760 | M | M.EcosPA8ORF27775P (100% identity) | M.EcoPA9ORF5760P | |
| 5761 | 73 aa hypothetical protein | |||
| 3596 | regulatory protein | |||
| ??? | M | M.EspP079ORF2847P (100% identity) | GATC | M.EcoPA9ORF3597P |
| 3598 | 70 aa hypothetical protein | |||
| 3566 | prophage repressor CI | |||
| 3567 | M | M.Sso1099I (100% identity) | CTGCAG | M.EcoPA9ORF3567P |
| 3568 | R | Sso1099IP (100% identity) | CTGCAG | EcoPA9ORF3567P |
| 3569 | 50 aa hypothetical protein | |||
| 2953 | 306 aa hypothetical protein | |||
| 2954 | V | V.EcosPA8DcmP (100% identity) | V.EcoPA9DcmP | |
| 2955 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoPA9DcmP |
| 2956 | 231 aa hypothetical protein | |||
| 18 | ATP-dependent helicase | |||
| 19 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoPA9ORF19P |
| 4663 | ribulose-phosphate 3-epimerase | |||
| 4664 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoPA9DamP |
| 4665 | protein damX | |||
| 5503 | 65 aa hypothetical protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.EcoPA9ORFAP | |
| 5506 | 114 aa hypothetical protein | |||
| 4558 | DNA-binding protein fis | |||
| 4559 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoPA9ORF4559P |
| 4560 | 37 aa hypothetical protein | |||