Helicobacter pylori OK310 |
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Putative Helicobacter pylori OK310 RM systems
Ref: Yahara,K. et al. Mol. Biol. Evol. (2013) In press
REBASE ref # 15740
Complete sequence: 1,591,278 bp
GenBank #: AP012601
REBASE acronym: Hpy310
Org_num: 10255
All begin HPOK310_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 439 | polyphosphate kinase | |||
| 440 | S | S.HpyTN2ORF5020P (99% identity) | S.Hpy310ORF441P | |
| 441 | M | M.HpyOK310ORFRP (100% identity) | M.Hpy310ORF441P | |
| ??? | R | HpyOK310ORFRP (100% identity) | Hpy310ORF441P | |
| 444 | 631 aa hypothetical protein | |||
| 496 | 228 aa hypothetical protein | |||
| 497 | M | M.HpyOK310ORFTP (92% identity) | M.Hpy310ORF497P | |
| 498 | S | S.HpyOK310ORFTP (100% identity) | S.Hpy310ORF497P | |
| 499 | R | HpyOK310ORFTP (100% identity) | Hpy310ORF497P | |
| 500 | thiamine phosphate pyrophosphorylase | |||
| 554 | cadmium-transporting ATPase | |||
| 555 | S | S.HpyOK310ORFUP (100% identity) | S.Hpy310ORF555P | |
| 556 | outer membrane protein HofF | |||
| 1415 | FAD-dependent thymidylate synthase | |||
| ??? | S | S.HpyOK310ORFGP (100% identity) | S.Hpy310ORF1418P | |
| 1418 | M | M.HpyOK310ORFGP (100% identity) | M.Hpy310ORF1418P | |
| 1419 | R | HpyOK310ORFGP (100% identity) | Hpy310ORF1418P | |
| 1420 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 44 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | Hpy193ORFUP (93% identity) | Hpy310ORF45P | |
| 47 | adenine specific DNA methyltransferase | |||
| ??? | DNA methyltransferase | |||
| 47 | M | M.HpyUM114ORF6535P (100% identity) | GANTC | M.Hpy310ORF47P |
| 48 | 56 aa hypothetical protein | |||
| ??? | R | HpyKG10ORF6795P (96% identity) | GANTC | Hpy310ORF47P |
| 51 | carboxyl-terminal protease | |||
| 58 | 242 aa hypothetical protein | |||
| 59 | M | M1.HpyOK310ORFLP (100% identity) | CCTC | M1.Hpy310ORF59P |
| 60 | M | M2.HpyOK310ORFLP (100% identity) | CCTC | M2.Hpy310ORF59P |
| 61 | R | HpyOK310ORFLP (97% identity) | CCTC | Hpy310ORF59P |
| 62 | type II DNA modification enzyme | |||
| 61 | type II DNA modification enzyme | |||
| 62 | M | M.HpySG13XII (100% identity) | GTSAC | M.Hpy310ORF62P |
| ??? | R | HpyOK310ORFNP (100% identity) | GTSAC | Hpy310ORF62P |
| ??? | DNA methylase | |||
| ??? | restriction endonuclease | |||
| ??? | M | DNA methylase | CCTTC | M.Hpy310ORFAP |
| 65 | proline permease | |||
| 103 | malonyl coenzyme A-acyl carrier protein | |||
| 104 | R | HpyOK310ORFOP (100% identity) | GATC | Hpy310ORF105P |
| 105 | M | M.HpyOK310ORFOP (100% identity) | GATC | M.Hpy310ORF105P |
| 106 | alpha-1,2-fucosyltransferase | |||
| 263 | exodeoxyribonuclease VII large subunit | |||
| 264 | M | M.HpyOK310ORFPP (100% identity) | TCGA | M.Hpy310ORF264P |
| 265 | 204 aa hypothetical protein | |||
| 265 | 204 aa hypothetical protein | |||
| 266 | R | HpyOK113ORF272P (97% identity) | CCGG | Hpy310ORF267P |
| 267 | M | M.HpyOK95ORFBP (100% identity) | CCGG | M.Hpy310ORF267P |
| 268 | ATP-dependent protease binding subunit | |||
| 316 | 293 aa hypothetical protein | |||
| 317 | R | HpyOK310ORFQP (96% identity) | CTNAG | Hpy310ORF318P |
| 318 | M | M.HpyOK68ORFMP (100% identity) | CTNAG | M.Hpy310ORF318P |
| 319 | 125 aa hypothetical protein | |||
| 458 | outer membrane protein | |||
| 459 | M | M.HpyOK310ORFSP (100% identity) | ATTAAT | M.Hpy310ORF459P |
| 460 | Type II adenine specific methyltransferase | |||
| 461 | 599 aa hypothetical protein | |||
| 462 | M | M.HpyOK310ORFJP (100% identity) | ACNGT | M.Hpy310ORF462P |
| ??? | R | HpyTW05IIIP (100% identity) | ACNGT | Hpy310ORF462P |
| 465 | type II DNA modification enzyme | |||
| ??? | 207 aa hypothetical protein | |||
| 465 | M | M.HpyCHN4ORF2355P (99% identity) | ACGT | M.Hpy310ORF465P |
| 466 | R | HpyOK310ORFKP (100% identity) | ACGT | Hpy310ORF465P |
| 467 | catalase-like protein | |||
| 660 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
| ??? | RM | HpyOK310ORFVP (92% identity) | Hpy310ORF661P | |
| 663 | outer membrane protein HorF | |||
| 860 | flagellar hook protein FlgE | |||
| 861 | R | HpyOK310ORFWP (100% identity) | GTNNAC | Hpy310ORF862P |
| 862 | M | M.HpyMKM1ORF905P (97% identity) | GTNNAC | M.Hpy310ORF862P |
| 863 | rep helicase, single-stranded DNA-dependent | |||
| 982 | biotin carboxylase | |||
| 983 | M | M.HpyOK310ORFXP (100% identity) | TCNNGA | M.Hpy310ORF983P |
| 984 | R | HpyP82ORFWP (100% identity) | TCNNGA | Hpy310ORF983P |
| 985 | 197 aa hypothetical protein | |||
| 1017 | 144 aa hypothetical protein | |||
| 1018 | M | M.HpyOK310ORFYP (100% identity) | GCGC | M.Hpy310ORF1018P |
| 1019 | flgM protein | |||
| 1102 | 222 aa hypothetical protein | |||
| 1103 | M | M.HpyOK310ORFBP (93% identity) | CATG | M.Hpy310ORF1103P |
| 1104 | 59 aa hypothetical protein | |||
| 1318 | DNA polymerase I | |||
| 1319 | S | S2.HpyOK310ORFDP (84% identity) | S.Hpy310ORF1320P | |
| ??? | RM | Hpy39ORFTP (97% identity) | Hpy310ORF1320P | |
| 1322 | 191 aa hypothetical protein | |||
| 1347 | 355 aa hypothetical protein | |||
| 1348 | M | M2.HpyMKM1ORF1409P (93% identity) | GATGG | M1.Hpy310ORF1348P |
| 1349 | M | M2.Hpyfe88ORF155P (100% identity) | CCATC | M2.Hpy310ORF1348P |
| 1350 | R | HpyMA06VIP (97% identity) | CCATC | Hpy310ORF1348P |
| 1351 | outer membrane protein | |||
| 1369 | 142 aa hypothetical protein | |||
| 1370 | RM | HpyOK310ORFEP (97% identity) | Hpy310ORF1370P | |
| 1371 | 458 aa hypothetical protein | |||
| 1437 | 67 aa hypothetical protein | |||
| 1438 | M | M.HpyUM038ORF1005P (48% identity) | TGCA | M1.Hpy310ORF1438P |
| 1439 | M | type II methylase protein | TGCA | M2.Hpy310ORF1438P |
| 1440 | R | HpyOK310ORFHP (100% identity) | TGCA | Hpy310ORF1438P |
| 1441 | type II DNA modification enzyme | |||
| 1440 | Type II restriction enzyme | |||
| 1441 | M | M.HpyOK310ORFIP (100% identity) | M.Hpy310ORF1441P | |
| 1442 | 338 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1252 | endonuclease | |||
| 1253 | M | M.HpyOK310ORFCP (100% identity) | M.Hpy310ORF1253P | |
| 1254 | R | HpyOK310ORFCP (92% identity) | Hpy310ORF1253P | |
| 1255 | biotin synthase | |||
| 1402 | 151 aa hypothetical protein | |||
| 1403 | R | HpyOK310ORFFP (100% identity) | Hpy310ORF1404P | |
| ??? | M | M.HpyOK310ORFFP (100% identity) | M.Hpy310ORF1404P | |
| 1406 | DNA recombinase | |||