Helicobacter pylori OK113 |
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Putative Helicobacter pylori OK113 RM systems
Ref: Yahara,K. et al. Mol. Biol. Evol. (2013) In press
REBASE ref # 15738
Complete sequence: 1,616,617 bp
GenBank #: AP012600
REBASE acronym: HpyOK113
Org_num: 3217
All begin HPOK113_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 444 | polyphosphate kinase | |||
| 445 | S | S.HpyOK13ORFSP (100% identity) | S.HpyOK113ORF446P | |
| 446 | M | M.HpyOK13ORFSP (100% identity) | M.HpyOK113ORF446P | |
| ??? | R | HpyOK13ORFSP (100% identity) | HpyOK113ORF446P | |
| 449 | 631 aa hypothetical protein | |||
| 801 | outer membrane protein HofF | |||
| 802 | S | S.HpyOK13ORFAP (100% identity) | S.HpyOK113ORF802P | |
| 803 | cadmium-transporting ATPase | |||
| 858 | thiamine phosphate pyrophosphorylase | |||
| 859 | R | HpyOK13ORFXP (100% identity) | HpyOK113ORF861P | |
| 860 | S | S.HpyOK13ORFXP (100% identity) | S.HpyOK113ORF861P | |
| 861 | M | M.HpyOK13ORFXP (95% identity) | M.HpyOK113ORF861P | |
| 862 | 228 aa hypothetical protein | |||
| 1447 | FAD-dependent thymidylate synthase | |||
| 1448 | S | S.HpyOK13ORFIP (100% identity) | S.HpyOK113ORF1449P | |
| 1449 | M | M.HpyOK13ORFIP (100% identity) | M.HpyOK113ORF1449P | |
| ??? | R | HpyOK13ORFIP (100% identity) | HpyOK113ORF1449P | |
| 1453 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 43 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyOK44ORFLP (96% identity) | HpyOK113ORF44P | |
| 46 | adenine specific DNA methyltransferase | |||
| ??? | type IIG restriction-modification enzyme | |||
| 46 | M | M.HpyOK13ORFNP (100% identity) | GANTC | M.HpyOK113ORF46P |
| ??? | R | HpyOK13ORFNP (77% identity) | GANTC | HpyOK113ORF46P |
| 48 | carboxyl-terminal protease | |||
| 55 | 242 aa hypothetical protein | |||
| 56 | M | M1.HpyOK13ORFLP (100% identity) | CCTC | M1.HpyOK113ORF56P |
| 57 | M | M2.HpyOK13ORFLP (100% identity) | CCTC | M2.HpyOK113ORF56P |
| 58 | R | HpyOK13ORFLP (97% identity) | CCTC | HpyOK113ORF56P |
| 59 | type II DNA modification enzyme | |||
| 58 | type II DNA modification enzyme | |||
| 59 | M | M.HpyOki112ORF515P (99% identity) | GTSAC | M.HpyOK113ORF59P |
| ??? | R | HpyOK79ORFNP (100% identity) | GTSAC | HpyOK113ORF59P |
| 62 | proline permease | |||
| 102 | malonyl coenzyme A-acyl carrier protein | |||
| 103 | R | HpyOK13ORFPP (100% identity) | GATC | HpyOK113ORF104P |
| 104 | M | M.HpyOK13ORFPP (100% identity) | GATC | M.HpyOK113ORF104P |
| 105 | alpha-1,2-fucosyltransferase | |||
| 268 | exodeoxyribonuclease VII large subunit | |||
| 269 | M | M.HpyOK310ORFPP (100% identity) | TCGA | M.HpyOK113ORF269P |
| 270 | 155 aa hypothetical protein | |||
| 270 | 155 aa hypothetical protein | |||
| 271 | R | Hpy310ORF267P (97% identity) | CCGG | HpyOK113ORF272P |
| 272 | M | M.HpyOK95ORFBP (100% identity) | CCGG | M.HpyOK113ORF272P |
| 273 | ATP-dependent protease binding subunit | |||
| 319 | 293 aa hypothetical protein | |||
| 320 | R | HpyOK13ORFRP (96% identity) | CTNAG | HpyOK113ORF321P |
| 321 | M | M.HpyOki112ORF1850P (100% identity) | CTNAG | M.HpyOK113ORF321P |
| 322 | 122 aa hypothetical protein | |||
| 462 | outer membrane protein | |||
| 463 | M | M.HpyOK13ORFTP (100% identity) | ATTAAT | M.HpyOK113ORF463P |
| 464 | Type II adenine specific methyltransferase | |||
| 465 | 599 aa hypothetical protein | |||
| 466 | M | M.HpyOK13ORFKP (100% identity) | ACNGT | M.HpyOK113ORF466P |
| ??? | R | HpyOK13ORFKP (100% identity) | ACNGT | HpyOK113ORF466P |
| 469 | catalase-like protein | |||
| 485 | DNA gyrase subunit B | |||
| 486 | M | M.HpyOK13ORFUP (99% identity) | GTAC | M.HpyOK113ORF486P |
| 487 | R | HpyOK13ORFUP (95% identity) | GTAC | HpyOK113ORF486P |
| 488 | outer membrane protein | |||
| 680 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
| ??? | RM | HpyOK13ORFVP (100% identity) | HpyOK113ORF681P | |
| 684 | outer membrane protein HorF | |||
| 698 | 270 aa hypothetical protein | |||
| 699 | M | M.Hpyfe56ORF3730P (100% identity) | CCNNGG | M.HpyOK113ORF699P |
| 700 | R | HpyOK13ORFWP (100% identity) | CCNNGG | HpyOK113ORF699P |
| 701 | 133 aa hypothetical protein | |||
| 917 | flagellar hook protein FlgE | |||
| 918 | R | HpyOK13ORFYP (100% identity) | GTNNAC | HpyOK113ORF919P |
| 919 | M | M.HpySORF4790P (98% identity) | GTNNAC | M.HpyOK113ORF919P |
| 920 | rep helicase, single-stranded DNA-dependent | |||
| 1045 | biotin carboxylase | |||
| 1046 | M | M.HpyOK13ORFZP (100% identity) | TCNNGA | M.HpyOK113ORF1046P |
| ??? | R | HpyOK13ORFZP (100% identity) | TCNNGA | HpyOK113ORF1046P |
| 1049 | 214 aa hypothetical protein | |||
| 1082 | 144 aa hypothetical protein | |||
| 1083 | M | M.HpyOki112ORF5935P (98% identity) | GCGC | M.HpyOK113ORF1083P |
| 1084 | flgM protein | |||
| 1164 | 222 aa hypothetical protein | |||
| 1165 | M | M.HpyOK13ORFCP (100% identity) | CATG | M.HpyOK113ORF1165P |
| ??? | R | HpyOK13ORFCP (100% identity) | CATG | HpyOK113ORF1165P |
| 1168 | serine acetyltransferase | |||
| 1383 | DNA polymerase I | |||
| 1384 | S | S.HpyOK13ORFEP (97% identity) | S.HpyOK113ORF1385P | |
| 1385 | RM | HpyOK13ORFEP (100% identity) | HpyOK113ORF1385P | |
| 1386 | 191 aa hypothetical protein | |||
| 1411 | 355 aa hypothetical protein | |||
| 1412 | M | M2.HpyOK13ORFFP (100% identity) | CCATC | M2.HpyOK113ORF1412P |
| 1413 | M | M2.Hpyfe88ORF155P (100% identity) | GATGG | M1.HpyOK113ORF1412P |
| 1414 | R | HpyOK13ORFFP (100% identity) | CCATC | HpyOK113ORF1412P |
| 1415 | outer membrane protein | |||
| 1432 | 122 aa hypothetical protein | |||
| 1433 | RM | HpyOK13ORFGP (97% identity) | HpyOK113ORF1433P | |
| 1434 | 535 aa hypothetical protein | |||
| 1469 | 67 aa hypothetical protein | |||
| 1470 | M | M.HpyOK13ORFJP (100% identity) | TGCA | M.HpyOK113ORF1470P |
| 1471 | R | HpyOK13ORFJP (100% identity) | TGCA | HpyOK113ORF1470P |
| 1472 | 177 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1317 | multidrug resistance protein | |||
| 1318 | M | M.HpyOK13ORFDP (100% identity) | M.HpyOK113ORF1318P | |
| 1319 | R | HpyOK13ORFDP (91% identity) | HpyOK113ORF1318P | |
| 1320 | biotin synthase | |||
| 1435 | 119 aa hypothetical protein | |||
| 1436 | R | HpyOK13ORFHP (100% identity) | HpyOK113ORF1437P | |
| 1437 | M | M.HpyOK13ORFHP (100% identity) | M.HpyOK113ORF1437P | |
| 1438 | DNA recombinase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 494 | glutamine synthetase | |||
| 495 | R | HpyOK13GmrSDP (98% identity) | HpyOK113GmrSDP | |
| 496 | 50S ribosomal protein L9 | |||