|
Putative Nitrolancetus hollandicus Lb RM systems
Ref: Sorokin,D.Y. et al. ISME J 6 (12), 2245-2256 (2012)
REBASE ref # 15491
Contig set: 3,888,104 bp
GenBank #: CAGS00000000 (NZ_CAGS00000000)
REBASE acronym: Nho
Org_num: 10074
All begin NITHO_, ORF_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
??? | M | SAM-dependent methyltransferase | M.NhoORFAP | |
1370002 | 110 aa hypothetical protein | |||
1370003 | R | PbaPan97ORF39890P (69% identity) | NhoORFAP | |
1 | M | M.Dac2973ORF1334P (45% identity) | M.NhoORFCP | |
??? | M | type I restriction-modification protein subunit M | M.NhoORFEP | |
2850002 | 325 aa conserved hypothetical protein | |||
1360001 | Abortive infection protein | |||
1360002 | S | S2.Cep9333ORF2584P (17% identity) | S.NhoORF1360003P | |
1360003 | M | M.Dve17965ORFBP (56% identity) | M.NhoORF1360003P | |
2290004 | 81 aa hypothetical protein | |||
2290005 | R | MspBLZ2ORFAP (70% identity) | NhoORF2290008P | |
2290006 | 13 aa hypothetical protein | |||
2290007 | 220 aa conserved hypothetical protein | |||
2290008 | M | M.MspBLZ2ORFAP (78% identity) | M.NhoORF2290008P | |
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
??? | RM | AspB510ORF3480P (23% identity) | NhoORFBP | |
1410002 | 157 aa hypothetical protein | |||
??? | RM | Smi511283ORF24835P (14% identity) | NhoORFDP | |
4090002 | 124 aa hypothetical protein | |||
670002 | conserved membrane hypothetical protein | |||
670003 | M | M.Sth20745I (70% identity) | TTAA | M.NhoORF670003P |
670004 | Response regulator receiver domain protein | |||
2770001 | RM | Cba153FORF11220P (37% identity) | NhoORF2770001P | |
2770002 | DNA polymerase beta domain protein region | |||
420002 | RM | Sth20745III (65% identity) | NhoORF420002P | |
4080003 | 206 aa conserved hypothetical protein | |||
4080004 | RM | NspDNFORF2123P (38% identity) | NhoORF4080004P | |
760006 | 22 aa hypothetical protein | |||
760007 | M | M.Gsp2ORFFP (49% identity) | CCGCGG | M.NhoORF760007P |
760008 | R | MspLL1ORF16435P (50% identity) | CCGCGG | NhoORF760007P |
760009 | V | V.Nba1253ORF1559P (40% identity) | V.NhoORF760007P | |
760010 | 84 aa hypothetical protein | |||
1400007 | 93 aa hypothetical protein | |||
1400009 | RM | NmoM1ORF3039BP (43% identity) | NhoORF1400009P | |
3400008 | inorganic polyphosphate/ATP-NAD kinase | |||
3400009 | RM | Kra44963ORF86P (70% identity) | NhoORF3400009P | |
3400010 | DNA repair protein recO | |||
5160017 | 107 aa hypothetical protein | |||
5160018 | RM | Lsp6250ORFDP (7% identity) | NhoORF5160018P | |
5160019 | Helicase domain protein | |||
160010 | 4-hydroxy-3-methylbut-2-enyl diphosphate | |||
??? | RM | Sth20745ORF276P (78% identity) | NhoORF160011P | |
160013 | HAD-superfamily hydrolase, subfamily IA, variant | |||
1020022 | 112 aa hypothetical protein | |||
1020023 | M | M.NhoORF1020023P (100% identity) | TCTAGA | M.NhoORF20023P |
1020024 | 100 aa hypothetical protein | |||
1020022 | 112 aa hypothetical protein | |||
1020023 | M | M.NhoORF20023P (100% identity) | TCTAGA | M.NhoORF1020023P |
1020024 | 100 aa hypothetical protein | |||
460031 | 63 aa hypothetical protein | |||
460032 | M | M.Cph266ORF1501P (46% identity) | GTCGAC | M.NhoORF460032P |
460033 | R | Rca13941ORF4293P (54% identity) | GTCGAC | NhoORF460032P |
2210025 | Glycosyl transferase group 1 | |||
2210026 | C | C.Pag976ORF2046P (48% identity) | C.NhoORF2210028P | |
2210027 | R | Mko49807ORF8665P (40% identity) | GGATCC | NhoORF2210028P |
2210028 | M | M.FspSL97ORF7995P (58% identity) | GGATCC | M.NhoORF2210028P |
2210029 | Histidyl-tRNA synthetase | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
2210001 | 60 aa hypothetical protein | |||
2210002 | R | Dsp106783ORF670P (75% identity) | NhoORF2210003P | |
2210003 | M | M.DmcATV1ORF848P (64% identity) | M.NhoORF2210003P | |
2210004 | transposase |