Escherichia coli APEC O78 |
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Putative Escherichia coli APEC O78 RM systems
Ref: Mangiamele,P.M. et al. unpublished
REBASE ref # 15803
Complete sequence: 4,798,435 bp
GenBank #: CP004009
REBASE acronym: EcoO78
Org_num: 10006
All begin APECO78_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 16835 | 298 aa hypothetical protein | |||
| 16840 | M | M.SenS688ORF13495P (100% identity) | M.EcoO78ORF16840P | |
| 16845 | S | S.Sen12509ORF5865P (100% identity) | S.EcoO78ORF16840P | |
| 16850 | R | Sen12509ORF5865P (100% identity) | EcoO78ORF16840P | |
| 16855 | IS1 transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2515 | transposase | |||
| ??? | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoO78ORF2520P |
| 2525 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoO78ORF2520P |
| 2530 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoO78ORF2520P |
| 2535 | 428 aa hypothetical protein | |||
| 3090 | 164 aa hypothetical protein | |||
| 3095 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoO78ORF3095P |
| 3100 | 108 aa hypothetical protein | |||
| 4720 | 162 aa hypothetical protein | |||
| 4725 | M | M.SflFF80ORF18305P (100% identity) | GATC | M.EcoO78ORF4725P |
| 4730 | 108 aa hypothetical protein | |||
| 4770 | 67 aa hypothetical protein | |||
| 4775 | M | M.EcoU013ORF19155P (100% identity) | M.EcoO78ORF4775P | |
| 4780 | transmembrane phage holin | |||
| 6260 | 64 aa hypothetical protein | |||
| 6265 | M | M.EcoACN2ORF562P (100% identity) | M.EcoO78ORF6265P | |
| 6270 | 67 aa hypothetical protein | |||
| 6300 | 108 aa hypothetical protein | |||
| 6305 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoO78ORF6305P |
| 6310 | 164 aa hypothetical protein | |||
| 7945 | 75 aa hypothetical protein | |||
| 7950 | M | M.EcoNC22ORF9180P (100% identity) | GATC | M.EcoO78ORF7950P |
| 7955 | 276 aa hypothetical protein | |||
| 13580 | DMT superfamily transporter inner membrane | |||
| 13585 | V | V.SsoSE61DcmP (100% identity) | V.EcoO78DcmP | |
| 13590 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoO78DcmP |
| 13595 | hydrolase | |||
| 20125 | global DNA-binding transcriptional dual | |||
| 20130 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoO78ORF20130P |
| 20135 | 59 aa hypothetical protein | |||
| 20720 | ribulose-phosphate 3-epimerase | |||
| 20725 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoO78DamP |
| 20730 | cell division protein DamX | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2530 | restriction endonuclease | |||
| 2535 | R | EcosS9McrCP (100% identity) | EcoO78McrCP | |
| 2540 | R | EcosS3McrBP (100% identity) | EcoO78McrBP | |
| 2545 | 35 aa hypothetical protein | |||
| 14680 | IS2 transposase TnpB | |||
| 14685 | R | Ecochi7122GmrSDP (100% identity) | EcoO78GmrSDP | |
| 14690 | DNA invertase | |||