Helicobacter pylori Rif1 |
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Putative Helicobacter pylori Rif1 RM systems
Ref: Manolov,A. et al. unpublished
REBASE ref # 15228
Complete sequence: 1,667,883 bp
GenBank #: CP003905
REBASE acronym: HpyRif1
Org_num: 9671
All begin C695_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2360 | 31 aa hypothetical protein | |||
| 2365 | S | S.HpyS299ORF3810P (100% identity) | S.HpyRif1ORF2375P | |
| 2370 | type I restriction enzyme M protein | |||
| 2375 | M | M.HpyS299ORF3810P (100% identity) | M.HpyRif1ORF2375P | |
| 2380 | R | HpyS299ORF3810P (100% identity) | HpyRif1ORF2375P | |
| 2385 | 631 aa hypothetical protein | |||
| 4050 | 48 aa hypothetical protein | |||
| 4055 | S | S.HpyS299IV (100% identity) | CTANNNNNNNNTGT | S.HpyRif1ORF4055P |
| 4060 | cadmium-transporting ATPase, P-type (cadA) | |||
| 4340 | hydroxyethylthiazole kinase | |||
| 4345 | R | HpyRif2ORF4365P (100% identity) | CTANNNNNNNNTGT | HpyRif1ORF4365P |
| 4350 | 33 aa hypothetical protein | |||
| ??? | S | S.HpyRif2ORF4365P (100% identity) | CTANNNNNNNNTGT | S.HpyRif1ORF4365P |
| 4365 | M | M.HpyRif2ORF4365P (100% identity) | CTANNNNNNNNTGT | M.HpyRif1ORF4365P |
| 4370 | 227 aa hypothetical protein | |||
| 7250 | 235 aa hypothetical protein | |||
| 7255 | R | HpyS299ORF7180P (99% identity) | HpyRif1ORF7260P | |
| 7260 | M | M.HpyS299ORF7180P (100% identity) | M.HpyRif1ORF7260P | |
| 7265 | S | S.HpyRif2ORF7260P (100% identity) | S.HpyRif1ORF7260P | |
| 7280 | biotin synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 225 | 330 aa hypothetical protein | |||
| 230 | M | M2.HpyS299IIIP (100% identity) | CCTC | M1.HpyRif1ORF230P |
| 235 | M | M1.HpyS299III (100% identity) | CCTC | M2.HpyRif1ORF230P |
| ??? | R | HpyP22ORFKP (100% identity) | CCTC | HpyRif1ORF230P |
| 250 | 419 aa hypothetical protein | |||
| ??? | HNH endonuclease family protein | |||
| 250 | R | HpyS299VIIIP (100% identity) | CCTTC | HpyRif1ORF255P |
| 255 | M | M.HpyS299VIII (100% identity) | CCTTC | M.HpyRif1ORF255P |
| 260 | sodium/proline symporter | |||
| 440 | malonyl CoA-acyl carrier protein transacylase | |||
| 445 | R | HpyS299VP (100% identity) | GATC | HpyRif1ORF450P |
| 450 | M | M.HpyS299V (100% identity) | GATC | M.HpyRif1ORF450P |
| 455 | alpha-1,2-fucosyltransferase | |||
| 1305 | exodeoxyribonuclease VII large subunit | |||
| 1310 | M | M.HpyS299VII (100% identity) | TCGA | M.HpyRif1ORF1310P |
| 1315 | 132 aa hypothetical protein | |||
| 1315 | 132 aa hypothetical protein | |||
| ??? | R | HpyS299ORF4845P (100% identity) | CCGG | HpyRif1ORF1325P |
| 1325 | M | M.HpyS299ORF4845P (100% identity) | CCGG | M.HpyRif1ORF1325P |
| 1330 | ATP-dependent protease binding subunit (clpB) | |||
| 1860 | 202 aa hypothetical protein | |||
| 1865 | R | HpyRif2ORF1870P (100% identity) | TCNNGA | HpyRif1ORF1870P |
| ??? | M | M.HpyS299ORF4305P (100% identity) | TCNNGA | M.HpyRif1ORF1870P |
| 1880 | biotin carboxylase | |||
| 2445 | 367 aa hypothetical protein | |||
| 2450 | M | M.HpyS299II (100% identity) | ATTAAT | M.HpyRif1ORF2450P |
| 2455 | 282 aa hypothetical protein | |||
| 2460 | GTP-binding protein TypA | |||
| ??? | M | M.HpyRif2ORFEP (100% identity) | ACNGT | M.HpyRif1ORFCP |
| 2475 | R | HpyRif2ORFEP (100% identity) | ACNGT | HpyRif1ORFCP |
| ??? | DNA methyltransferase | |||
| 2475 | 170 aa hypothetical protein | |||
| ??? | M | M.HpyS299ORF3700P (94% identity) | ACGT | M.HpyRif1ORFDP |
| 2490 | R | HpyS299ORF3700P (100% identity) | ACGT | HpyRif1ORFDP |
| 2495 | catalase-like protein | |||
| 2575 | DNA gyrase subunit B | |||
| ??? | M | M.HpyRif2ORFDP (100% identity) | GTAC | M.HpyRif1ORFBP |
| ??? | R | HpyRif2ORFDP (100% identity) | GTAC | HpyRif1ORFBP |
| 2600 | 403 aa hypothetical protein | |||
| 3450 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyRif2ORFGP (100% identity) | HpyRif1ORFAP | |
| 3470 | 449 aa hypothetical protein | |||
| 4680 | flagellar hook protein FlgE | |||
| 4685 | R | HpyS299ORF1570P (100% identity) | GTNNAC | HpyRif1ORF4690P |
| 4690 | M | M.HpyRif2ORF4690P (100% identity) | GTNNAC | M.HpyRif1ORF4690P |
| 4695 | rep helicase, single-stranded DNA-dependent | |||
| 5785 | 144 aa hypothetical protein | |||
| 5790 | M | M.HpyS299ORF435P (100% identity) | GCGC | M.HpyRif1ORF5790P |
| 5795 | 67 aa hypothetical protein | |||
| 6260 | 222 aa hypothetical protein | |||
| 6265 | M | M.HpyS299I (100% identity) | CATG | M.HpyRif1ORF6265P |
| 6270 | R | HpyRif2ORF6260P (100% identity) | CATG | HpyRif1ORF6265P |
| 6275 | serine acetyltransferase | |||
| 6975 | protease | |||
| 6980 | R | HpyS299ORF8615P (100% identity) | GANTC | HpyRif1ORF6985P |
| 6985 | M | M.HpyS299ORF8665P (100% identity) | GANTC | M.HpyRif1ORF6985P |
| ??? | Type IIG R-M system | |||
| 6985 | adenine-specific DNA methyltransferase | |||
| ??? | RM | HpyRif2ORF6990P (100% identity) | HpyRif1ORF6990P | |
| 7005 | nicotinate-nucleotide pyrophosphorylase | |||
| 7055 | response regulator | |||
| 7060 | R | HpyS299ORF7360P (100% identity) | GAAGA | HpyRif1ORF7065P |
| 7065 | M | M2.HpyS299ORF7360P (100% identity) | GAAGA | M1.HpyRif1ORF7065P |
| 7070 | M | M2.HpySWT04XIII (100% identity) | GAAGA | M2.HpyRif1ORF7065P |
| 7075 | adenine-specific DNA methylase | |||
| 7630 | DNA polymerase I | |||
| ??? | S | S.HpyRif2ORF7625P (100% identity) | S.HpyRif1ORF7640P | |
| 7640 | RM | HpyS299ORF6805P (100% identity) | HpyRif1ORF7640P | |
| 7645 | 191 aa hypothetical protein | |||
| 7870 | 179 aa hypothetical protein | |||
| ??? | RM | HpyRif2ORFAP (100% identity) | GCGTA | HpyRif1ORFEP |
| 7895 | type III restriction enzyme R protein (res) | |||
| 7975 | IS605 transposase (tnpA) | |||
| 7980 | M | M.HpyRif2ORF7965P (100% identity) | TGCA | M.HpyRif1ORF7980P |
| 7985 | R | HpyS299ORF6490P (100% identity) | TGCA | HpyRif1ORF7980P |
| 7990 | ubiquinol cytochrome c oxidoreductase, | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3055 | 2-oxoglutarate-acceptor oxidoreductase subunit | |||
| 3060 | R | HpyS299VIP (97% identity) | GCAG | HpyRif1ORF3065P |
| 3065 | M | M.HpyS299VI (100% identity) | GCAG | M.HpyRif1ORF3065P |
| 3070 | 54 aa hypothetical protein | |||
| 7070 | type IIS restriction enzyme M2 protein (mod) | |||
| ??? | M | M.HpyRif2ORF7075P (100% identity) | TCAG | M.HpyRif1ORF7075P |
| 7085 | R | HpyS299ORF7350P (100% identity) | TCAG | HpyRif1ORF7075P |
| 7090 | rod shape-determining protein MreC | |||
| ??? | type IIS restriction enzyme R and M protein | |||
| 7895 | R | HpyS299ORF6570P (100% identity) | HpyRif1ORFFP | |
| ??? | M | M.HpyRif2ORFBP (100% identity) | M.HpyRif1ORFFP | |
| 7910 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2635 | 34 aa hypothetical protein | |||
| 2640 | R | HpyS299GmrSD2P (100% identity) | HpyRif1GmrSDP | |
| 2645 | 50S ribosomal protein L9 | |||