Helicobacter pylori NAB47 |
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Putative Helicobacter pylori NAB47 RM systems
Ref: Kumar,N. et al. J. Bacteriol. 194 (21), 5963-5964 (2012)
REBASE ref # 15038
GenBank #: AJFA00000000
REBASE acronym: HpyNAB47
Org_num: 9492
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | type I restriction-modification system specificity subunit S | |||
| ??? | R | HpyUM067ORF6745P (95% identity) | HpyNAB47ORFFP | |
| ??? | S | S.HpyKH22ORFE1P (48% identity) | S.HpyNAB47ORFGP | |
| ??? | R | HpyMM01ORF2115P (75% identity) | HpyNAB47ORFXP | |
| ??? | M | M.HpyKH35ORFAP (93% identity) | M.HpyNAB47ORFXP | |
| ??? | S | S.HpyKH41ORFKP (98% identity) | S.HpyNAB47ORFXP | |
| ??? | S | type I restriction enzyme, S subunit | S.HpyNAB47ORFJ1P | |
| ??? | M | M.HpyFD662ORF6645P (94% identity) | M.HpyNAB47ORFK1P | |
| ??? | 235 aa hypothetical protein | |||
| ??? | R | HpyMA19ORF7200P (96% identity) | HpyNAB47ORFLP | |
| ??? | M | M.HpyKH17ORFUP (96% identity) | M.HpyNAB47ORFLP | |
| ??? | S | S.HpyR11XV (95% identity) | S.HpyNAB47ORFLP | |
| ??? | S | S.HpyTW05ORF2620P (55% identity) | S.HpyNAB47ORFAP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpyLI20III (91% identity) | ATTAAT | M.HpyNAB47ORFTP |
| ??? | R | HpyKH17ORFGP (99% identity) | CGWCG | HpyNAB47ORFG1P |
| ??? | M | M.HpyBT112ORF4530P (99% identity) | CGWCG | M.HpyNAB47ORFG1P |
| ??? | RM | HpyBGR1ORF7135P (89% identity) | HpyNAB47ORFNP | |
| ??? | type III restriction enzyme | |||
| ??? | M | M.HpyCRI6XIII (97% identity) | TCGA | M.HpyNAB47ORFA1P |
| ??? | type II R-M system restriction endonuclease | |||
| ??? | type II DNA modification (methyltransferase | |||
| ??? | R | HpyR08IVP (83% identity) | CCGG | HpyNAB47ORFB1P |
| ??? | M | M.HpyMA25III (99% identity) | CCGG | M.HpyNAB47ORFB1P |
| ??? | M | M.Hpyfe118ORF2920P (90% identity) | GTNNAC | M.HpyNAB47ORFPP |
| ??? | R | HpyZ009VIP (98% identity) | GTNNAC | HpyNAB47ORFPP |
| ??? | R | HpyNP07ORF2280P (96% identity) | ACGT | HpyNAB47ORFYP |
| ??? | M | M.HpySP14ORF2460P (98% identity) | ACGT | M.HpyNAB47ORFYP |
| ??? | type II restriction endonuclease | |||
| ??? | cytosine-specific methyltransferase | |||
| ??? | R | HpyKH7ORFA1P (100% identity) | ACNGT | HpyNAB47ORFZP |
| ??? | M | site-specific type II DNA methyltransferase | ACNGT | M1.HpyNAB47ORFZP |
| ??? | M | M.HpyKH44ORFC1P (67% identity) | ACNGT | M2.HpyNAB47ORFZP |
| ??? | M | M.HpyFD430ORFWP (98% identity) | GCGC | M.HpyNAB47ORFSP |
| ??? | R | HpyKH14ORFNP (95% identity) | CATG | HpyNAB47ORFMP |
| ??? | M | M.HpyMM03I (99% identity) | CATG | M.HpyNAB47ORFMP |
| ??? | M | M.HpyMA19ORF7285P (100% identity) | M.HpyNAB47ORFE1P | |
| ??? | R | HpyMA25ORF6550P (98% identity) | GANTC | HpyNAB47ORFCP |
| ??? | M | M.HpyKH15ORFB1P (98% identity) | GANTC | M.HpyNAB47ORFCP |
| ??? | 99 aa hypothetical protein | |||
| ??? | 159 aa hypothetical protein HPCPY6261_0295 | |||
| ??? | RM | 99 aa hypothetical protein | HpyNAB47ORFDP | |
| ??? | M | M.Hpy2099ORF490P (97% identity) | GATC | M.HpyNAB47ORFH1P |
| ??? | RM | HpyMM05ORF6330P (85% identity) | HpyNAB47ORFQP | |
| ??? | M | M.HpyKH39ORFHP (98% identity) | GTAC | M.HpyNAB47ORFC1P |
| ??? | R | HpyFD719ORF4735P (97% identity) | GTAC | HpyNAB47ORFC1P |
| ??? | M | M.HpySG13VI (100% identity) | CTNAG | M.HpyNAB47ORFHP |
| ??? | R | HpyUM084ORF1020P (99% identity) | CTNAG | HpyNAB47ORFHP |
| ??? | R | HpyKH14ORFEP (98% identity) | TCNNGA | HpyNAB47ORFBP |
| ??? | M | M.HpyKH26ORFZP (99% identity) | TCNNGA | M.HpyNAB47ORFBP |
| ??? | RM | HpyUM084ORF1905P (96% identity) | HpyNAB47ORFUP | |
| ??? | S | S.HpyKH22ORFE1P (50% identity) | S.HpyNAB47ORFUP | |
| ??? | M | M.HpyKH31ORFAP (97% identity) | CCTC | M1.HpyNAB47ORFIP |
| ??? | M | M2.HpyMA16VIIP (99% identity) | CCTC | M2.HpyNAB47ORFIP |
| ??? | R | HpyMA16VIIP (95% identity) | CCTC | HpyNAB47ORFIP |
| ??? | RM | HpyBG5ORF1765P (88% identity) | HpyNAB47ORFJP | |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | type III restriction enzyme R protein | HpyNAB47ORFWP | |
| ??? | M | M.HpyKG5ORF330P (94% identity) | M.HpyNAB47ORFWP | |
| ??? | M | M.HpyKH40ORFZP (56% identity) | M.HpyNAB47ORFRP | |
| ??? | R | HpyIN1ORF5980P (81% identity) | HpyNAB47ORFD1P | |
| ??? | type II S restriction-modification protein | |||
| ??? | R | HpyKH10ORFWP (97% identity) | HpyNAB47ORFOP | |
| ??? | M | M.HpyKH39ORFQP (28% identity) | M.HpyNAB47ORFOP | |
| ??? | R | HpyFD719ORF7265P (92% identity) | HpyNAB47ORFVP | |
| ??? | M | M.HpyFD423ORFLP (42% identity) | M.HpyNAB47ORFVP | |
| ??? | M | adenine-specific DNA-methyltransferase | M.HpyNAB47ORFKP | |