Helicobacter pylori FD662 |
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Putative Helicobacter pylori FD662 RM systems
Ref: Gunaletchumy,S.P. et al. J. Bacteriol. 194 (20), 5695-5696 (2012)
REBASE ref # 15007
Contig set: 1,659,453 bp
GenBank #: AKHT00000000
REBASE acronym: HpyFD662
Org_num: 9466
All begin N407_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6640 | S | S.HpyPOR111XV (95% identity) | S.HpyFD662ORF6645P | |
| ??? | M | M.HpyNAB47ORFK1P (94% identity) | M.HpyFD662ORF6645P | |
| 6655 | HrgA like protein | |||
| 6320 | S | S.HpyPOR111XV (95% identity) | S.HpyFD662ORF6645P | |
| 6325 | R | HpyKH39ORFVP (96% identity) | HpyFD662ORF6645P | |
| 6330 | 36 aa hypothetical protein | |||
| 515 | 30 aa hypothetical protein | |||
| 520 | S | S.HpyCOL122IX (94% identity) | S.HpyFD662ORF525P | |
| ??? | M | M.HpyKH11ORFMP (95% identity) | M.HpyFD662ORF525P | |
| ??? | R | HpyUM114ORF545P (94% identity) | HpyFD662ORF525P | |
| 540 | pseudogene | |||
| 3210 | 631 aa hypothetical protein | |||
| 3215 | R | HpyFD423ORFD1P (92% identity) | HpyFD662ORF3220P | |
| 3220 | M | M.HpyMA19ORF2005P (96% identity) | M.HpyFD662ORF3220P | |
| 3225 | S | S.HpyK154ORF3210P (96% identity) | S.HpyFD662ORF3220P | |
| 3235 | polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | RM | DNA methyltransferase, partial | HpyFD662ORFAP | |
| 7875 | RM | HpyKH11ORFUP (63% identity) | HpyFD662ORF7875P | |
| 7880 | nicotinate-nucleotide pyrophosphorylase | |||
| 8330 | membrane protein | |||
| 8335 | M | M.HpyKH7ORFZP (97% identity) | ATTAAT | M.HpyFD662ORF8335P |
| 8340 | glycosyltransferase 9 family protein | |||
| ??? | M | M.HpyFD535ORFMP (99% identity) | GANTC | M.HpyFD662ORF7855P |
| ??? | R | HpyMA17VIP (90% identity) | GANTC | HpyFD662ORF7855P |
| ??? | M | M.HpyKH34ORFAP (97% identity) | GATC | M.HpyFD662ORF1650P |
| ??? | R | HpyKH7ORFEP (95% identity) | GATC | HpyFD662ORF1650P |
| 4085 | molecular chaperone ClpB | |||
| 4090 | M | M.HpyID10IV (98% identity) | CCGG | M.HpyFD662ORF4090P |
| 4095 | R | HpyKH34ORFGP (98% identity) | CCGG | HpyFD662ORF4090P |
| 4100 | DNA methyltransferase | |||
| 8405 | 44 aa hypothetical protein | |||
| ??? | M | M.Hpyfe93ORF1580P (97% identity) | TCNGA | M.HpyFD662ORF8415P |
| ??? | R | HpyUM084ORF6720P (95% identity) | TCNGA | HpyFD662ORF8415P |
| 8420 | purine nucleoside phosphorylase | |||
| 7585 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyUM084ORF7720P (95% identity) | GTNNAC | M.HpyFD662ORF7590P |
| ??? | R | HpyKG6XIP (93% identity) | GTNNAC | HpyFD662ORF7590P |
| 7595 | flagellar hook protein FlgE | |||
| 8345 | GTP-binding protein | |||
| ??? | M | 251 aa hypothetical protein | ACNGT | M.HpyFD662ORF8350P |
| 8355 | R | HpyKH37ORFD1P (97% identity) | ACNGT | HpyFD662ORF8350P |
| 8360 | DNA methyltransferase | |||
| 4095 | 184 aa hypothetical protein | |||
| 4100 | M | M.HpyKH10ORFMP (87% identity) | TCGA | M.HpyFD662ORF4100P |
| 4105 | exodeoxyribonuclease VII large subunit | |||
| 8600 | 68 aa hypothetical protein | |||
| ??? | M | M.HpyKH7ORFAP (97% identity) | GCGC | M.HpyFD662ORF8605P |
| 8610 | 144 aa hypothetical protein | |||
| 8355 | type II restriction endonuclease | |||
| 8360 | M | M.Hpy334ORFBP (97% identity) | ACGT | M.HpyFD662ORF8360P |
| 8365 | catalase | |||
| 7850 | peptidase S41 | |||
| ??? | R | HpyMA17VIP (90% identity) | GANTC | HpyFD662ORF7855P |
| 7855 | M | M.HpyFD535ORFMP (99% identity) | GANTC | M.HpyFD662ORF7855P |
| 7860 | 43 aa hypothetical protein | |||
| 1920 | hydrolase | |||
| ??? | M | M.HpyKH34ORFDP (95% identity) | CATG | M.HpyFD662ORF1925P |
| 1930 | serine acetyltransferase | |||
| 1640 | malonyl CoA-ACP transacylase | |||
| 1650 | R | HpyKH7ORFEP (95% identity) | GATC | HpyFD662ORF1650P |
| 1655 | M | M.HpyKH34ORFAP (97% identity) | GATC | M.HpyFD662ORF1650P |
| 1660 | alpha-1,2-fucosyltransferase | |||
| ??? | RM | HpyMA04ORF7150P (98% identity) | HpyFD662ORF165P | |
| ??? | type IIS R-M system restriction enzyme | |||
| 5845 | membrane protein | |||
| ??? | R | HpyKH4ORFAP (96% identity) | GTAC | HpyFD662ORF5855P |
| ??? | M | M.HpyKH39ORFHP (97% identity) | GTAC | M.HpyFD662ORF5855P |
| 5860 | DNA gyrase subunit B | |||
| 160 | DNA polymerase I | |||
| ??? | S | S2.HpyKH32ORFUP (90% identity) | S1.HpyFD662ORF165P | |
| 170 | S | S.HpyFD430ORFM1P (52% identity) | S2.HpyFD662ORF165P | |
| 175 | RM | HpyMA04ORF7150P (98% identity) | HpyFD662ORF165P | |
| 180 | amidophosphoribosyltransferase | |||
| 2375 | membrane protein | |||
| ??? | RM | HpyIN4ORF3030P (85% identity) | HpyFD662ORF2380P | |
| 2390 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 5050 | Laminin subunit alpha-2 precursor | |||
| 5055 | R | HpyMM06XP (90% identity) | TCNNGA | HpyFD662ORF5060P |
| 5060 | M | M.Hpybs3ORFCP (98% identity) | TCNNGA | M.HpyFD662ORF5060P |
| 5065 | 280 aa hypothetical protein | |||
| 1180 | agmatine deiminase | |||
| 1185 | M | M1.HpyNP01III (97% identity) | CCTC | M1.HpyFD662ORF1185P |
| 1190 | M | M2.HpyUM084ORF2915P (99% identity) | CCTC | M2.HpyFD662ORF1185P |
| 1195 | sodium:proline symporter | |||
| 305 | permease | |||
| 310 | M | M1.HpyMM03IV (97% identity) | GATGG | M1.HpyFD662ORF310P |
| ??? | M | M1.HpyKH37ORFHP (99% identity) | CCATC | M2.HpyFD662ORF310P |
| 320 | R | HpyFD423ORFA1P (97% identity) | CCATC | HpyFD662ORF310P |
| 325 | membrane protein | |||
| 410 | 199 aa hypothetical protein | |||
| 415 | RM | HpyMA16XIV (73% identity) | HpyFD662ORF415P | |
| 420 | type I restriction endonuclease | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 440 | M | M.HpyFD719ORF3395P (68% identity) | M.HpyFD662ORF440P | |
| 445 | ATP-dependent DNA helicase RecG | |||
| 7940 | M | DNA methyltransferase | M.HpyFD662ORF7940P | |
| 7945 | R | HpyG002ORF6735P (92% identity) | HpyFD662ORF7940P | |
| 7950 | rod shape-determining protein MreC | |||
| 8015 | 38 aa hypothetical protein | |||
| 8020 | M | M.HpyKH39ORFLP (94% identity) | M.HpyFD662ORF8020P | |
| ??? | R | HpyFD430ORFSP (92% identity) | HpyFD662ORF8020P | |
| 8025 | biotin synthase | |||
| 7930 | chemotaxis protein CheY | |||
| 7935 | M | M.HpyFD719ORF7265P (54% identity) | M.HpyFD662ORF7935P | |
| 425 | 712 aa hypothetical protein | |||
| 430 | R | HpyK022ORF7075P (93% identity) | HpyFD662ORF435P | |
| 435 | M | M.HpyKH22ORFQP (29% identity) | M.HpyFD662ORF435P | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5800 | 50S ribosomal protein L9 | |||
| 5805 | R | HpyNP09GmrSDP (90% identity) | HpyFD662GmrSDP | |
| 5810 | glutamine synthetase | |||