Helicobacter pylori FD568 |
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Putative Helicobacter pylori FD568 RM systems
Ref: Gunaletchumy,S.P. et al. J. Bacteriol. 194 (20), 5695-5696 (2012)
REBASE ref # 15007
GenBank #: AKHQ00000000
REBASE acronym: HpyFD568
Org_num: 9465
All begin N405_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | S.Hpy1139ORFRP (51% identity) | S.HpyFD568ORFBP | |
| ??? | R | Hpyfe99ORF4915P (28% identity) | HpyFD568ORFDP | |
| ??? | S | type I restriction enzyme, S subunit | S.HpyFD568ORFDP | |
| ??? | S | S.HpyOK316ORFVP (99% identity) | S.HpyFD568ORFIP | |
| ??? | M | M.Hpyfe48ORF4915P (97% identity) | M.HpyFD568ORFIP | |
| ??? | R | HpyHK840ORFD1P (72% identity) | HpyFD568ORFIP | |
| ??? | R | HpyH137ORF5035P (70% identity) | HpyFD568ORFJP | |
| ??? | R | HpyMA08VP (97% identity) | HpyFD568ORFD1P | |
| ??? | M | M.Hpyfe24ORF7655P (96% identity) | M.HpyFD568ORFD1P | |
| ??? | S | S.HpyP77ORFNP (98% identity) | S.HpyFD568ORFD1P | |
| ??? | S | S2.HpyJA106ORF6940P (93% identity) | S.HpyFD568ORFPP | |
| ??? | M | M.Hpyfe60ORF3035P (92% identity) | M.HpyFD568ORFRP | |
| 2725 | 30 aa hypothetical protein | |||
| 2730 | S | S.HpyP77ORFNP (98% identity) | S.HpyFD568ORFD1P | |
| 2735 | M | M.Hpyfe24ORF7655P (96% identity) | M.HpyFD568ORFD1P | |
| 2740 | R | HpyMA08VP (97% identity) | HpyFD568ORFD1P | |
| 2745 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | S.HpyK051ORF7025P (52% identity) | S.HpyFD568ORFCP | |
| ??? | RM | restriction enzyme BcgI alpha chain-like protein | HpyFD568ORFCP | |
| ??? | RM | HpyOK316ORFFP (86% identity) | HpyFD568ORFJ1P | |
| ??? | M | M.HpySORF7000P (98% identity) | GANTC | M.HpyFD568ORFHP |
| ??? | R | HpyK052VIP (97% identity) | GANTC | HpyFD568ORFHP |
| ??? | M | M1.HpyOK316ORFNP (99% identity) | CCTC | M1.HpyFD568ORFFP |
| ??? | M | M2.HpyTW07XVIP (99% identity) | CCTC | M2.HpyFD568ORFFP |
| ??? | R | HpyML2ORFHP (96% identity) | CCTC | HpyFD568ORFFP |
| ??? | adenine methyltransferase | |||
| ??? | M | M.Hpyfe11ORF1140P (97% identity) | GATC | M.HpyFD568ORFZP |
| ??? | R | HpyTW07XIP (96% identity) | GATC | HpyFD568ORFZP |
| ??? | 280 aa hypothetical protein HPHPH43_0540 | |||
| ??? | M | M.HpyK029II (99% identity) | ATTAAT | M2.HpyFD568ORFEP |
| ??? | R | HpyOK95ORFUP (100% identity) | CATG | HpyFD568ORFA1P |
| ??? | M | M.HpySG02I (98% identity) | CATG | M.HpyFD568ORFA1P |
| ??? | M | M.HpyMA23XI (99% identity) | ACNGT | M.HpyFD568ORFKP |
| ??? | R | Hpyfe118ORF4995P (98% identity) | ACNGT | HpyFD568ORFKP |
| ??? | cytosine-specific methyltransferase | |||
| ??? | restriction endonuclease | |||
| ??? | M | M.HpySG13XII (100% identity) | GTSAC | M.HpyFD568ORFGP |
| ??? | R | HpyOK316ORFRP (99% identity) | GTSAC | HpyFD568ORFGP |
| ??? | M | M.HpyUM023ORF3280P (99% identity) | CCGG | M.HpyFD568ORFTP |
| ??? | R | HpyCHN8IVP (89% identity) | CCGG | HpyFD568ORFTP |
| ??? | type II restriction endonuclease | |||
| ??? | M | M.HpyOK316ORFMP (97% identity) | ACGT | M.HpyFD568ORFLP |
| ??? | R | Hpyfe64ORF3345P (98% identity) | ACGT | HpyFD568ORFLP |
| ??? | R | HpyMA20VIIP (99% identity) | TGCA | HpyFD568ORFYP |
| ??? | M | M.HpyMA20VII (99% identity) | TGCA | M.HpyFD568ORFYP |
| ??? | M | M.HpyOK316ORFTP (100% identity) | ACGG | M.HpyFD568ORFL1P |
| ??? | R | Hpyfe81ORF1020P (100% identity) | ACGG | HpyFD568ORFL1P |
| ??? | M | M.HpyKH39ORFCP (93% identity) | GCGC | M.HpyFD568ORFNP |
| ??? | Type IIG restriction-modification enzyme | |||
| ??? | RM | Hpyfe32ORF3935P (22% identity) | HpyFD568ORFF1P | |
| ??? | RM | HpyPF57ORF3445P (71% identity) | HpyFD568ORFE1P | |
| ??? | helicase domain protein | |||
| ??? | M | M.Hpyfe11ORF5775P (99% identity) | TCNNGA | M.HpyFD568ORFC1P |
| ??? | R | HpyID1XIP (89% identity) | TCNNGA | HpyFD568ORFC1P |
| ??? | R | HpyMKF8ORF913P (98% identity) | GTNNAC | HpyFD568ORFB1P |
| ??? | M | M.HpyCHN3VIII (91% identity) | GTNNAC | M.HpyFD568ORFB1P |
| ??? | RM | HpySH007ORF6515P (86% identity) | HpyFD568ORFWP | |
| ??? | M | DNA -methyltransferase | CCTC | M.HpyFD568ORFUP |
| ??? | M | M2.Hpyfe49ORF135P (99% identity) | GATGG | M1.HpyFD568ORFI1P |
| ??? | M | M2.HpysHP34ORF1580P (95% identity) | CCATC | M2.HpyFD568ORFI1P |
| ??? | R | HpyT026IVP (97% identity) | CCATC | HpyFD568ORFI1P |
| ??? | RM | HpySG26XIII (93% identity) | HpyFD568ORFG1P | |
| ??? | type III restriction enzyme | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpyMA22ORF205P (42% identity) | M.HpyFD568ORFMP | |
| ??? | R | HpyV001ORF205P (95% identity) | HpyFD568ORFMP | |
| ??? | M | M.HpyJA103ORF2740P (55% identity) | M.HpyFD568ORFXP | |
| ??? | M | M.HpyK052ORF6440P (97% identity) | M.HpyFD568ORFVP | |
| ??? | R | Hpyfe96ORF675P (90% identity) | HpyFD568ORFVP | |
| ??? | M | type III R-M system modification enzyme | M.HpyFD568ORFQP | |
| ??? | type II restriction-modification enzyme | |||
| ??? | R | HpyOK316ORFIP (93% identity) | HpyFD568ORFH1P | |
| ??? | M | M.HpySG18ORF7350P (28% identity) | M.HpyFD568ORFH1P | |