Helicobacter pylori FD535 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori FD535 RM systems
Ref: Gunaletchumy,S.P. et al. J. Bacteriol. 194 (20), 5695-5696 (2012)
REBASE ref # 15007
GenBank #: AKHP00000000
REBASE acronym: HpyFD535
Org_num: 9464
All begin N411_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpyMM09ORF4050P (94% identity) | M.HpyFD535ORFFP | |
| ??? | S | S.HpyMA17ORF2305P (42% identity) | S.HpyFD535ORFFP | |
| 5310 | metal-dependent hydrolase | |||
| 5315 | R | HpyMM01ORF7395P (94% identity) | HpyFD535ORFD1P | |
| 5320 | M | M.HpyKH17ORFUP (96% identity) | M.HpyFD535ORFD1P | |
| 5325 | CAAX protease | |||
| 5330 | S | S.HpyMA17ORF6715P (98% identity) | S.HpyFD535ORFD1P | |
| 5335 | 33 aa hypothetical protein | |||
| ??? | R | HpyMM01ORF7395P (94% identity) | HpyFD535ORFD1P | |
| ??? | M | M.HpyKH17ORFUP (96% identity) | M.HpyFD535ORFD1P | |
| ??? | S | S.HpyMA17ORF6715P (98% identity) | S.HpyFD535ORFD1P | |
| ??? | R | HpyIN5ORF2140P (91% identity) | HpyFD535ORFL1P | |
| ??? | M | M.HpyKH45ORFBP (96% identity) | M.HpyFD535ORFL1P | |
| ??? | S | S.HpyK016ORF2780P (99% identity) | S.HpyFD535ORFL1P | |
| ??? | R | HpyUM067ORF6745P (94% identity) | HpyFD535ORFWP | |
| ??? | S | S.HpyL002ORF2665P (56% identity) | S.HpyFD535ORFYP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | RM | Type IIG restriction-modification enzyme | HpyFD535ORFAP | |
| ??? | adenine specific DNA methyltransferase 2 | |||
| ??? | M | M.HpyNP04VIII (99% identity) | GANTC | M.HpyFD535ORFMP |
| ??? | R | HpyKH32ORFLP (97% identity) | GANTC | HpyFD535ORFMP |
| ??? | adenine specific DNA methyltransferase 2 | |||
| ??? | RM | adenine specific DNA methyltransferase 2 | HpyFD535ORFLP | |
| ??? | modification methylase BabI | |||
| ??? | RM | HpyMA25ORF6560P (70% identity) | HpyFD535ORFSP | |
| ??? | R | HpyBS30ORF7610P (99% identity) | TGCA | HpyFD535ORFPP |
| ??? | M | M.HpyCA19IX (99% identity) | TGCA | M.HpyFD535ORFPP |
| ??? | RM | HpyMM11XIII (92% identity) | HpyFD535ORFDP | |
| ??? | type III restriction enzyme | |||
| ??? | M | M.HpySW21ORF7420P (96% identity) | M.HpyFD535ORFK1P | |
| ??? | 282 aa hypothetical protein HPHPA27_0464 | |||
| ??? | M | M.HpyF018II (97% identity) | ATTAAT | M.HpyFD535ORFBP |
| ??? | M | M.HpyUSU101ORF2595P (97% identity) | ACNGT | M.HpyFD535ORFGP |
| ??? | R | type II restriction endonuclease | ACNGT | HpyFD535ORFGP |
| ??? | cytosine-specific methyltransferase | |||
| ??? | 297 aa hypothetical protein | |||
| ??? | RM | adenine specific DNA methyltransferase 2 | HpyFD535ORFNP | |
| ??? | type II restriction endonuclease | |||
| ??? | M | M.HpyMM07XIII (98% identity) | ACGT | M.HpyFD535ORFHP |
| ??? | R | HpyMA02ORF2105P (94% identity) | ACGT | HpyFD535ORFHP |
| ??? | M | M.HpyID8ORF1590P (98% identity) | CTNAG | M.HpyFD535ORFE1P |
| ??? | R | HpySG05ORF1685P (93% identity) | CTNAG | HpyFD535ORFE1P |
| ??? | R | restriction endonuclease R.HpyAXII | GTAC | HpyFD535ORFXP |
| ??? | R | HpyKH15ORFEP (98% identity) | CGCG | HpyFD535ORFOP |
| ??? | M | M.HpyKH22ORFB1P (98% identity) | CGCG | M.HpyFD535ORFOP |
| ??? | M | M1.HpyJO2V (97% identity) | CCTC | M.HpyFD535ORFIP |
| ??? | M | M.HpyP87ORFRP (97% identity) | GCGC | M.HpyFD535ORFVP |
| ??? | R | HpyJO5IVP (98% identity) | CCATC | HpyFD535ORFJP |
| ??? | M | M1.HpyME46IV (93% identity) | CCATC | M2.HpyFD535ORFJP |
| ??? | M | M2.HpyKG6V (93% identity) | GATGG | M1.HpyFD535ORFJP |
| ??? | M | M.HpySP304VIII (97% identity) | GATC | M.HpyFD535ORFZP |
| ??? | type II DNA modification enzyme | |||
| ??? | R | endonuclease MjaVIP | CCGG | HpyFD535ORFB1P |
| ??? | M | M.HpyKH15ORFNP (98% identity) | CCGG | M.HpyFD535ORFB1P |
| ??? | M | M.HpyKH40ORFAP (88% identity) | TCGA | M.HpyFD535ORFA1P |
| ??? | endonuclease MjaVIP | |||
| ??? | M | M.Hpy52ORF1144P (90% identity) | CATG | M.HpyFD535ORFG1P |
| ??? | R | M.HpyFD535ORFG1P (25% identity) | CATG | HpyFD535ORFG1P |
| ??? | M | M.HpyFD423ORFNP (88% identity) | GTNNAC | M.HpyFD535ORFF1P |
| ??? | R | Hpyfe60ORF2770P (91% identity) | GTNNAC | HpyFD535ORFF1P |
| ??? | RM | HpyUM084ORF4375P (88% identity) | HpyFD535ORFJ1P | |
| ??? | RM | HpySW02ORF7410P (95% identity) | HpyFD535ORFI1P | |
| ??? | S | S.HpyKH44ORFOP (95% identity) | S.HpyFD535ORFI1P | |
| ??? | R | HpyFD703ORF335P (89% identity) | TCNNGA | HpyFD535ORFH1P |
| ??? | M | M.HpyOK302ORFYP (99% identity) | TCNNGA | M.HpyFD535ORFH1P |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | hypothetical protein | |||
| ??? | R | HpyMA17ORF6785P (96% identity) | HpyFD535ORFEP | |
| ??? | M | M.HpyMA05ORF7200P (29% identity) | M.HpyFD535ORFEP | |
| ??? | R | HpyKH10ORFD1P (94% identity) | HpyFD535ORFCP | |
| ??? | M | M.HpyIN8ORF6695P (41% identity) | M.HpyFD535ORFCP | |
| ??? | R | HpyMA17ORF3740P (95% identity) | CTGCAG | HpyFD535ORFKP |
| ??? | M | M.HpyMA25ORF3775P (67% identity) | M.HpyFD535ORFKP | |
| ??? | M | M.HpyBG1ORF6610P (97% identity) | M.HpyFD535ORFUP | |
| ??? | R | HpyKH28ORFGP (92% identity) | HpyFD535ORFUP | |
| ??? | M | adenine specific DNA methyltransferase | M.HpyFD535ORFTP | |
| ??? | M | M.HpyKH40ORFZP (56% identity) | M.HpyFD535ORFRP | |
| ??? | M | M.HpyKH6ORFTP (65% identity) | M.HpyFD535ORFC1P | |