Helicobacter pylori FD423 |
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Putative Helicobacter pylori FD423 RM systems
Ref: Gunaletchumy,S.P. et al. J. Bacteriol. 194 (20), 5695-5696 (2012)
REBASE ref # 15007
GenBank #: AKHM00000000
REBASE acronym: HpyFD423
Org_num: 9424
All begin N402_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6800 | S | S.HpyFD423ORFHP (35% identity) | S.HpyFD423ORF6805P | |
| 6805 | M | M.HpyKH45ORFYP (89% identity) | M.HpyFD423ORF6805P | |
| 6810 | membrane protein | |||
| ??? | S | S.HpyIN3XII (61% identity) | S.HpyFD423ORFCP | |
| ??? | M | M.HpyFD423ORF6805P (69% identity) | M.HpyFD423ORFGP | |
| ??? | S | S.HpyKH6ORFVP (42% identity) | S.HpyFD423ORFJP | |
| ??? | M | M.HpyFD703ORF7550P (95% identity) | M.HpyFD423ORFJP | |
| ??? | R | HpyMA19ORF2265P (96% identity) | HpyFD423ORFHP | |
| ??? | S | S.HpyIN8ORF2440P (66% identity) | S.HpyFD423ORFHP | |
| ??? | M | hsdM-2 gene product | M.HpyFD423ORFHP | |
| ??? | R | HpyFD662ORF3220P (92% identity) | HpyFD423ORFD1P | |
| ??? | M | M.HpyKH34ORFLP (95% identity) | M.HpyFD423ORFD1P | |
| ??? | S | S.HpyL023ORF2305P (92% identity) | S.HpyFD423ORFD1P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | type II restriction endonuclease | GANTC | HpyFD423ORFAP |
| ??? | M | M.HpyFD423ORFEP (45% identity) | GANTC | M.HpyFD423ORFAP |
| ??? | R | IceA1 | CATG | HpyFD423ORFBP |
| ??? | R | HpyNAB47ORFMP (67% identity) | CATG | HpyFD423ORFMP |
| ??? | M | M.HpyNP08I (97% identity) | CATG | M.HpyFD423ORFMP |
| ??? | RM | adenine specific DNA methyltransferase 2 | HpyFD423ORFDP | |
| ??? | adenine specific DNA methyltransferase | |||
| ??? | adenine specific DNA methyltransferase 2 | |||
| ??? | M | M.HpyK045VII (98% identity) | GANTC | M.HpyFD423ORFEP |
| ??? | type II restriction endonuclease | |||
| ??? | R | HpyFD423ORFKP (100% identity) | GAAGA | HpyFD423ORFK1P |
| ??? | M | M1.HpyFD423ORFKP (100% identity) | GAAGA | M1.HpyFD423ORFK1P |
| ??? | M | M1.HpyUM084ORF8285P (95% identity) | GAAGA | M2.HpyFD423ORFK1P |
| ??? | R | HpyFD423ORFK1P (100% identity) | GAAGA | HpyFD423ORFKP |
| ??? | M | M1.HpyFD423ORFK1P (100% identity) | GAAGA | M1.HpyFD423ORFKP |
| ??? | M | type IIS restriction enzyme M2 protein | GAAGA | M2.HpyFD423ORFKP |
| ??? | 837 aa hypothetical protein VN1169_00980 | |||
| ??? | adenine specific DNA methyltransferase | |||
| ??? | R | type II restriction endonuclease | GANTC | HpyFD423ORFAP |
| ??? | M | M.HpyKH22ORFIP (96% identity) | GTNNAC | M.HpyFD423ORFNP |
| ??? | 282 aa hypothetical protein HPHPA27_0464 | |||
| ??? | M | M.HpyKH7ORFZP (97% identity) | ATTAAT | M.HpyFD423ORFFP |
| ??? | R | HpyUM084ORF1020P (100% identity) | CTNAG | HpyFD423ORFSP |
| ??? | M | M.HpySG13VI (100% identity) | CTNAG | M.HpyFD423ORFSP |
| ??? | M | M.HpyKH27ORFEP (99% identity) | TCNNGA | M.HpyFD423ORFG1P |
| ??? | R | HpyR04XIP (99% identity) | TCNNGA | HpyFD423ORFG1P |
| ??? | R | 220 aa hypothetical protein | ACGT | HpyFD423ORFOP |
| ??? | M | M.HpyKH15ORFKP (98% identity) | ACGT | M.HpyFD423ORFOP |
| ??? | type II restriction endonuclease | |||
| ??? | cytosine-specific methyltransferase | |||
| ??? | R | Hpyfe78ORF2200P (80% identity) | ACNGT | HpyFD423ORFPP |
| ??? | M | M.HpyFD703ORF4880P (92% identity) | ACNGT | M.HpyFD423ORFPP |
| ??? | M | M.HpyMA02XI (95% identity) | GCGC | M.HpyFD423ORFRP |
| ??? | M | M1.HpyISR2IV (99% identity) | GATGG | M1.HpyFD423ORFA1P |
| ??? | M | M1.Hpy13207IV (93% identity) | CCATC | M2.HpyFD423ORFA1P |
| ??? | R | HpyFD662ORF310P (97% identity) | CCATC | HpyFD423ORFA1P |
| ??? | R | HpyKH11ORFGP (97% identity) | GTAC | HpyFD423ORFTP |
| ??? | M | M.HpyKH17ORFFP (97% identity) | GTAC | M.HpyFD423ORFTP |
| ??? | type III R-M system methyltransferase | |||
| ??? | R | HpyMM03VP (93% identity) | CCGG | HpyFD423ORFXP |
| ??? | M | M.HpyMA25III (99% identity) | CCGG | M.HpyFD423ORFXP |
| ??? | M | M.HpyMA25II (97% identity) | TCGA | M.HpyFD423ORFWP |
| ??? | Endonuclease MjaVIP | |||
| ??? | M | M.HpyKH45ORFHP (98% identity) | TGCA | M.HpyFD423ORFQP |
| ??? | R | HpyKH43ORFQP (98% identity) | TGCA | HpyFD423ORFQP |
| ??? | RM | HpyP005ORF7305P (96% identity) | HpyFD423ORFI1P | |
| ??? | S | S.HpyHPYORF285P (59% identity) | S.HpyFD423ORFI1P | |
| ??? | RM | HpyKH44ORFRP (74% identity) | HpyFD423ORFE1P | |
| ??? | type III restriction enzyme | |||
| ??? | RM | HpySW10ORF6695P (82% identity) | HpyFD423ORFZP | |
| ??? | M | M2.HpyFD719ORF980P (86% identity) | CCTC | M2.HpyFD423ORFYP |
| ??? | M | M1.HpyNP01III (97% identity) | CCTC | M1.HpyFD423ORFYP |
| ??? | M | M.HpyUM037III (96% identity) | GATC | M.HpyFD423ORFVP |
| ??? | RM | 389 aa hypothetical protein | HpyFD423ORFB1P | |
| ??? | M | M.HpyNAB47ORFE1P (97% identity) | M.HpyFD423ORFH1P | |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | type IIS restriction enzyme M2 protein | |||
| ??? | M | M.HpyFD423ORFJ1P (100% identity) | M.HpyFD423ORFLP | |
| ??? | R | HpyFD423ORFJ1P (100% identity) | HpyFD423ORFLP | |
| ??? | M | M.HpyFD423ORFLP (100% identity) | M.HpyFD423ORFJ1P | |
| ??? | R | HpyFD423ORFLP (100% identity) | HpyFD423ORFJ1P | |
| ??? | R | HpyUM084ORF8205P (92% identity) | HpyFD423ORFUP | |
| ??? | M | M.HpyMKM1ORF1309P (93% identity) | M.HpyFD423ORFUP | |
| ??? | type IIS restriction enzyme R and M protein | |||
| ??? | R | HpyMA25ORF7305P (95% identity) | HpyFD423ORFF1P | |
| ??? | M | M.HpyLI25ORF7375P (94% identity) | M.HpyFD423ORFF1P | |