Ref: Swingley,W.D. et al. Proc. Natl. Acad. Sci. U.S.A. (2008) In press

REBASE ref # 10343

Sequence length:GenBank #:
Chromosome: 6,503,724 bp CP000828 (NC_009925)
plasmid pREB1: 374,161 bp CP000838 (NC_009926)
plasmid pREB3: 273,121 bp CP000840 (NC_009928)

REBASE acronym: AmaM

Org_num: 4880

 

All begin AM1_, AM1_A, AM1_C

Type I
ORF Gene Most similar Specificity Name
 
Chromosome
 
673 64 aa hypothetical protein
672 R Asp5410ORFAP (0% identity) AmaMORF679P
674 157 aa conserved hypothetical protein
675 53 aa hypothetical protein
676 433 aa hypothetical protein
677 conserved domain protein
678 S S.Asp5410ORFAP (0% identity) S.AmaMORF679P
679 M M.Asp5410ORFAP (0% identity) M.AmaMORF679P
681 transposase
 
681 transposase
680 M M.Asp5410ORFAP (0% identity) M.AmaMORF680P
682 57 aa hypothetical protein
 
2231 375 aa conserved hypothetical protein
2233 S S.Pst4166ORF1489P (0% identity) S.AmaMORF2236P
2234 143 aa conserved hypothetical protein
2235 161 aa hypothetical protein
2236 M M.Asp5410ORFIP (0% identity) M.AmaMORF2236P
2237 R Asp5410ORFIP (0% identity) AmaMORF2236P
2239 glycosyl transferase, group 1, putative
 
4776 255 aa hypothetical protein
4777 R Lsp6406ORFSP (0% identity) AmaMORF4786P
4778 addiction module toxin, RelE/StbE family,
4779 86 aa hypothetical protein
4780 183 aa conserved hypothetical protein
??? S S.Ppo17875ORF2648P (0% identity) S.AmaMORF4786P
4784 43 aa hypothetical protein
4783 FdxN element excision controlling factor
4785 FdxN element excision controlling factor
4786 M M.Lsp6406ORFSP (0% identity) M.AmaMORF4786P
4787 69 aa hypothetical protein
Type II
ORF Gene Most similar Specificity Name
 
Chromosome
 
407 lipopolysaccharide biosynthesis protein,
408 M M.Asp5410ORFDP (0% identity) M.AmaMORF408P
409 orotate phosphoribosyltransferase
 
728 oxidoreductase, short chain
729 M M.Asp5410ORFFP (0% identity) CGATCG M.AmaMORF729P
730 cation diffusion facilitator (CDF) family
 
2409 51 aa hypothetical protein
2410 M M.KspEA1ORF2250P (0% identity) M.AmaMORF2410P
2411 680 aa conserved hypothetical protein
 
2582 75 aa hypothetical protein
2583 M M.Rcu932ORF7520P (0% identity) CCGCGG M.AmaMORF2583P
2584 R AplYZORF2560P (0% identity) CCGCGG AmaMORF2583P
2585 303 aa hypothetical protein
 
3078 44 aa hypothetical protein
3079 M M.Asp5410ORFJP (0% identity) GATC M.AmaMDamP
3080 conserved domain protein
 
5872 100 aa conserved hypothetical protein
5873 M M.Asp5410ORFNP (0% identity) TGGCCA M.AmaMORF5873P
5874 83 aa conserved hypothetical protein
 
plasmid pREB1
 
16 625 aa hypothetical protein
17 M M.Lsp7376ORF1501P (0% identity) M.AmaMORF17P
18 sensor histidine kinase, putative
 
328 176 aa hypothetical protein
329 M M.Asp5410ORFPP (0% identity) CGATCG M.AmaMORF329P
330 73 aa hypothetical protein
 
plasmid pREB3
 
299 phage protein Gp37/Gp68
300 M M.Asp5410ORFKP (0% identity) GATC M.AmaMORF300P
302 53 aa hypothetical protein