Rhodanobacter thiooxydans LCS2 |
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Putative Rhodanobacter thiooxydans LCS2 RM systems
Ref: Kostka,J.E. et al. J. Bacteriol. 194 (16), 4461-4462 (2012)
REBASE ref # 14775
Contig set: 4,093,898 bp
GenBank #: AJXW00000000 (NZ_AJXW00000000)
REBASE acronym: Rsp18863
Org_num: 9236
All begin UUA_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6319 | ABC transporter | |||
| 6324 | S | S.PaeGOM9ORF11770P (39% identity) | S.Rsp18863ORF6329P | |
| 6329 | M | M.AspAMDI (79% identity) | M.Rsp18863ORF6329P | |
| 6334 | DNA-damage-inducible protein D | |||
| 6339 | R | type I restriction modification enzyme | Rsp18863ORF6329P | |
| 6344 | hydroxymethylglutaryl-CoA lyase | |||
| 10156 | 346 aa hypothetical protein | |||
| 10161 | R | RthC33ORFEP (94% identity) | Rsp18863ORF10196P | |
| 10166 | 144 aa hypothetical protein | |||
| 10171 | DNA polymerase subunit beta | |||
| 10176 | 309 aa hypothetical protein | |||
| 10181 | 151 aa hypothetical protein | |||
| 10186 | S | S.Bps0801ORF30P (48% identity) | S.Rsp18863ORF10196P | |
| 10191 | excinuclease ABC subunit C | |||
| 10196 | M | M.RthC33ORFEP (80% identity) | M.Rsp18863ORF10196P | |
| 10201 | transcriptional modulator of MazE/toxin, MazF | |||
| 18177 | YoeB toxin protein | |||
| 18182 | M | M.Sma25MORF3025P (62% identity) | M.Rsp18863ORF18182P | |
| 18187 | R | BspNP157ORF10870P (81% identity) | Rsp18863ORF18182P | |
| 18192 | aspartate racemase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 130 | 492 aa hypothetical protein | |||
| 135 | V | V.Nsp111ORFHP (80% identity) | V.Rsp18863ORF140P | |
| 140 | M | M.Pap773ORFAP (21% identity) | M.Rsp18863ORF140P | |
| 145 | 61 aa hypothetical protein | |||
| 5142 | trans-2-enoyl-CoA reductase | |||
| 5147 | R | RdeR5ORF9560P (88% identity) | CTCGAG | Rsp18863ORF5152P |
| 5152 | M | M.Rsp24678ORF17320P (64% identity) | CTCGAG | M.Rsp18863ORF5152P |
| 5157 | 146 aa hypothetical protein | |||
| 8876 | 74 aa hypothetical protein | |||
| 8881 | M | M.RspZ3ORF10470P (69% identity) | M.Rsp18863ORF8881P | |
| 8886 | 110 aa hypothetical protein | |||
| 12373 | 245 aa hypothetical protein | |||
| 12378 | M | M.OanPBOORF19650P (49% identity) | M.Rsp18863ORF12378P | |
| 12383 | 128 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4213 | 158 aa hypothetical protein | |||
| 4218 | M | M.RthR12ORF4740P (49% identity) | M.Rsp18863ORF4218P | |
| 4223 | R | RthR12ORF4740P (95% identity) | Rsp18863ORF4218P | |
| 4228 | amino acid transporter | |||
| 13495 | FeS assembly SUF system regulator, | |||
| 13500 | R | LspCW239ORF5035P (66% identity) | Rsp18863ORF13505P | |
| 13505 | M | M.LspCW239ORF5035P (60% identity) | M.Rsp18863ORF13505P | |
| 13510 | 140 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1260 | 312 aa hypothetical protein | |||
| 1265 | R | Rsp17631MrrP (76% identity) | Rsp18863MrrP | |
| 1270 | 189 aa hypothetical protein | |||
| ??? | R | restriction endonuclease | Rsp18863Mrr2P | |