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Putative Rhodanobacter species 116-2 RM systems
Ref: Kostka,J.E. et al. J. Bacteriol. 194 (16), 4461-4462 (2012)
REBASE ref # 14775
Contig set: 3,975,538 bp
GenBank #: AJXV00000000 (NZ_AJXV00000000)
REBASE acronym: Rsp24678
Org_num: 9234
All begin UUC_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
13313 | N-6 DNA methylase | |||
13318 | M | M.RdeR2ORF3539P (100% identity) | M.Rsp24678ORF13313P | |
13323 | type I restriction-modification system | |||
13328 | plasmid maintenance system killer | |||
13333 | XRE family transcriptional regulator | |||
13338 | R | Rde24678ORF3075P (100% identity) | Rsp24678ORF13313P | |
17000 | DNA-binding protein | |||
17005 | M | M.RdeR3ORF17580P (100% identity) | M.Rsp24678ORF17005P | |
??? | S | S.RdeR3ORF17580P (75% identity) | S.Rsp24678ORF17005P | |
17015 | 393 aa hypothetical protein | |||
17050 | helix-turn-helix domain-containing protein | |||
17055 | R | RdeR3ORF17710P (100% identity) | Rsp24678ORF17055P | |
17060 | 266 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
3630 | 62 aa hypothetical protein | |||
3635 | M | M.Psp67ORF1762P (69% identity) | ACCGGT | M.Rsp24678ORF3635P |
3640 | 555 aa hypothetical protein | |||
3645 | R | VchAMOZMcrBP (8% identity) | Rsp24678ORF3635P | |
3650 | V | V.Psp67ORF1762P (52% identity) | V.Rsp24678ORF3635P | |
3655 | 721 aa hypothetical protein | |||
9358 | AAA ATPase | |||
??? | M | M.RdeR5ORF10390P (98% identity) | M.Rsp24678ORF9363P | |
9368 | 176 aa hypothetical protein | |||
16830 | acyl-CoA thioesterase | |||
16835 | M | M.Rde24678ORF14770P (100% identity) | GGGCCC | M.Rsp24678ORF16835P |
??? | R | R2.Rde24678ORF14770P (100% identity) | GGGCCC | Rsp24678ORF16835P |
17237 | 121 aa hypothetical protein | |||
??? | R | R1.Rde24678ORF14770P (87% identity) | GGGCCC | Rsp24678ORFAP |
17310 | EamA family protein | |||
??? | R | Rde24678ORF10005P (100% identity) | CTCGAG | Rsp24678ORF17320P |
17320 | M | M.RdeR2ORF2481P (83% identity) | CTCGAG | M.Rsp24678ORF17320P |
17325 | polysaccharide deacetylase | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
5061 | 719 aa hypothetical protein | |||
5066 | R | Rde24678ORF8695P (100% identity) | Rsp24678ORF5071P | |
5071 | M | M.Rde24678ORF8695P (100% identity) | M.Rsp24678ORF5071P | |
5076 | 374 aa hypothetical protein | |||
7971 | NERD domain-containing protein | |||
7976 | R | Rde24678ORF13845P (100% identity) | Rsp24678ORF7981P | |
7981 | M | M.RdeR2ORF1038P (96% identity) | M.Rsp24678ORF7981P | |
7986 | 195 aa hypothetical protein | |||
8828 | 148 aa hypothetical protein | |||
8833 | M | M.RdeR2ORF242P (99% identity) | M.Rsp24678ORF8833P | |
8838 | XRE family plasmid maintenance system antidote | |||
8843 | plasmid maintenance system killer | |||
8848 | R | Rde24678ORF16290P (100% identity) | Rsp24678ORF8833P | |
8853 | amino acid transporter | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
3620 | single-stranded-DNA-specific exonuclease RecJ | |||
3625 | R | Rde24678GmrSDP (100% identity) | Rsp24678GmrSDP | |
3630 | 62 aa hypothetical protein | |||
2356 | 243 aa hypothetical protein | |||
2361 | R | RdeR2Mrr2P (100% identity) | Rsp24678MrrP | |
2366 | 189 aa hypothetical protein | |||
16375 | R | AmaHL49MrrP (51% identity) | Rsp24678Mrr2P | |
16380 | coniferyl aldehyde dehydrogenase (caldh) | |||
18155 | R | CowOLMrrP (26% identity) | Rsp24678Mrr3P | |
??? | R | restriction endonuclease | Rsp24678Mrr4P | |
??? | R | restriction endonuclease | Rsp24678Mrr5P |