Ref: Kostka,J.E. et al. J. Bacteriol. 194 (16), 4461-4462 (2012)

REBASE ref # 14775

Contig set: 3,975,538 bp

GenBank #: AJXV00000000 (NZ_AJXV00000000)

REBASE acronym: Rsp24678

Org_num: 9234

 

All begin UUC_

Type I
ORF Gene Most similar Specificity Name
 
13313 N-6 DNA methylase
13318 M M.RdeR2ORF3539P (100% identity) M.Rsp24678ORF13313P
13323 type I restriction-modification system
13328 plasmid maintenance system killer
13333 XRE family transcriptional regulator
13338 R Rde24678ORF3075P (100% identity) Rsp24678ORF13313P
 
17000 DNA-binding protein
17005 M M.RdeR3ORF17580P (100% identity) M.Rsp24678ORF17005P
??? S S.RdeR3ORF17580P (75% identity) S.Rsp24678ORF17005P
17015 393 aa hypothetical protein
 
17050 helix-turn-helix domain-containing protein
17055 R RdeR3ORF17710P (100% identity) Rsp24678ORF17055P
17060 266 aa hypothetical protein
Type II
ORF Gene Most similar Specificity Name
 
3630 62 aa hypothetical protein
3635 M M.Psp67ORF1762P (69% identity) ACCGGT M.Rsp24678ORF3635P
3640 555 aa hypothetical protein
3645 R VchAMOZMcrBP (8% identity) Rsp24678ORF3635P
3650 V V.Psp67ORF1762P (52% identity) V.Rsp24678ORF3635P
3655 721 aa hypothetical protein
 
9358 AAA ATPase
??? M M.RdeR5ORF10390P (98% identity) M.Rsp24678ORF9363P
9368 176 aa hypothetical protein
 
16830 acyl-CoA thioesterase
16835 M M.Rde24678ORF14770P (100% identity) GGGCCC M.Rsp24678ORF16835P
??? R R2.Rde24678ORF14770P (100% identity) GGGCCC Rsp24678ORF16835P
 
17237 121 aa hypothetical protein
??? R R1.Rde24678ORF14770P (87% identity) GGGCCC Rsp24678ORFAP
 
17310 EamA family protein
??? R Rde24678ORF10005P (100% identity) CTCGAG Rsp24678ORF17320P
17320 M M.RdeR2ORF2481P (83% identity) CTCGAG M.Rsp24678ORF17320P
17325 polysaccharide deacetylase
Type III
ORF Gene Most similar Specificity Name
 
5061 719 aa hypothetical protein
5066 R Rde24678ORF8695P (100% identity) Rsp24678ORF5071P
5071 M M.Rde24678ORF8695P (100% identity) M.Rsp24678ORF5071P
5076 374 aa hypothetical protein
 
7971 NERD domain-containing protein
7976 R Rde24678ORF13845P (100% identity) Rsp24678ORF7981P
7981 M M.RdeR2ORF1038P (96% identity) M.Rsp24678ORF7981P
7986 195 aa hypothetical protein
 
8828 148 aa hypothetical protein
8833 M M.RdeR2ORF242P (99% identity) M.Rsp24678ORF8833P
8838 XRE family plasmid maintenance system antidote
8843 plasmid maintenance system killer
8848 R Rde24678ORF16290P (100% identity) Rsp24678ORF8833P
8853 amino acid transporter
Type IV
ORF Gene Most similar Specificity Name
 
3620 single-stranded-DNA-specific exonuclease RecJ
3625 R Rde24678GmrSDP (100% identity) Rsp24678GmrSDP
3630 62 aa hypothetical protein
 
2356 243 aa hypothetical protein
2361 R RdeR2Mrr2P (100% identity) Rsp24678MrrP
2366 189 aa hypothetical protein
 
16375 R AmaHL49MrrP (51% identity) Rsp24678Mrr2P
16380 coniferyl aldehyde dehydrogenase (caldh)
 
18155 R CowOLMrrP (26% identity) Rsp24678Mrr3P
 
??? R restriction endonuclease Rsp24678Mrr4P
 
??? R restriction endonuclease Rsp24678Mrr5P
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