Rhodanobacter species 115 |
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Putative Rhodanobacter species 115 RM systems
Ref: Kostka,J.E. et al. J. Bacteriol. 194 (16), 4461-4462 (2012)
REBASE ref # 14775
Contig set: 4,239,760 bp
GenBank #: AJXS00000000 (NZ_AJXS00000000)
REBASE acronym: Rsp115
Org_num: 9248
All begin UU5_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2567 | M | M.PmeDMF5ORF480P (67% identity) | M.Rsp115ORF2567P | |
| 2572 | ubiquinone/menaquinone biosynthesis | |||
| 12058 | 190 aa hypothetical protein | |||
| 12063 | S | S.SsaSK355ORF53P (33% identity) | S.Rsp115ORF12068P | |
| 12068 | M | M.GloSZORF636P (66% identity) | M.Rsp115ORF12068P | |
| 12073 | plasmid stabilization system | |||
| 12078 | 89 aa hypothetical protein | |||
| 12083 | R | Fsp911ORF8445P (64% identity) | Rsp115ORF12068P | |
| 12088 | 68 aa hypothetical protein | |||
| ??? | S | S.Rca37b4ORF13680P (38% identity) | S.Rsp115ORF13147P | |
| 13157 | 143 aa hypothetical protein | |||
| 13162 | HipA N-terminal domain-containing protein | |||
| 13167 | XRE family transcriptional regulator | |||
| 13172 | 96 aa hypothetical protein | |||
| 13177 | 99 aa hypothetical protein | |||
| ??? | R | Rsp17631ORF14955P (92% identity) | Rsp115ORF13147P | |
| 16679 | 219 aa hypothetical protein | |||
| 16684 | S | S.VspRA8ORF1679P (45% identity) | S.Rsp115ORF16694P | |
| 16689 | 72 aa hypothetical protein | |||
| 16694 | M | M.Rsp24678ORF17005P (89% identity) | M.Rsp115ORF16694P | |
| 16699 | DNA-binding protein | |||
| 16614 | 135 aa hypothetical protein | |||
| ??? | R | Rsp24678ORF17055P (91% identity) | Rsp115ORFCP | |
| 16629 | helix-turn-helix domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6295 | 120 aa hypothetical protein | |||
| 6300 | M | M.RthC33ORFGP (29% identity) | M.Rsp115ORF6300P | |
| 6305 | V | V.RthC33ORFGP (71% identity) | V.Rsp115ORF6300P | |
| 6310 | 83 aa hypothetical protein | |||
| 15223 | 387 aa hypothetical protein | |||
| ??? | R | Rsp18863ORF5152P (85% identity) | CTCGAG | Rsp115ORFBP |
| ??? | M | M.Rsp18863ORF5152P (72% identity) | CTCGAG | M.Rsp115ORFBP |
| 15238 | LysR family regulatory protein | |||
| 16924 | 92 aa hypothetical protein | |||
| ??? | RM | MfiC10ORFSAP (37% identity) | Rsp115ORFDP | |
| 16939 | phage-related integrase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10006 | 1220 aa hypothetical protein | |||
| ??? | M | M.Rsp115ORF18797P (84% identity) | M.Rsp115ORFAP | |
| 10021 | 318 aa hypothetical protein | |||
| 10026 | 320 aa hypothetical protein | |||
| 10031 | R | Rsp17631ORF7526P (98% identity) | Rsp115ORFAP | |
| 10036 | 68 aa hypothetical protein | |||
| 18792 | 366 aa hypothetical protein | |||
| 18797 | M | M.Rsp115ORFAP (84% identity) | M.Rsp115ORF18797P | |
| 18802 | DNA-damage-inducible protein D | |||
| ??? | R | AbrPbN1ORF38640P (73% identity) | Rsp115ORF18797P | |
| 18817 | 141 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3537 | urocanate hydratase | |||
| 3542 | R | ElaLN1MrrP (52% identity) | Rsp115MrrP | |
| 3547 | fimbrial protein (pilin) | |||
| 11520 | PAS and GAF sensor-containing diguanylate | |||
| 11525 | R | 253 aa hypothetical protein | Rsp115Mrr2P | |
| 11530 | 228 aa hypothetical protein | |||
| 20290 | R | VspEJY3McrBP (25% identity) | Rsp115McrBP | |
| 20295 | 156 aa hypothetical protein | |||