Treponema species JC4 |
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Putative Treponema species JC4 RM systems
Ref: Rosewarne,C.P. et al. J. Bacteriol. 194 (15), 4130 (2012)
REBASE ref # 14722
Contig set: 3,032,045 bp
GenBank #: AJGU00000000 (NZ_AJGU00000000)
REBASE acronym: TspJC4
Org_num: 9161
All begin MSI_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20930 | KAP family P-loop domain-containing protein | |||
| 20940 | R | TruRU1ORF7445P (94% identity) | TspJC4ORF20940P | |
| 20950 | Abi-like protein | |||
| 21450 | Site-specific recombinase XerD | |||
| 21460 | S | S1.Efa0037ORFBP (29% identity) | S.TspJC4ORF21460P | |
| 21470 | 305 aa hypothetical protein | |||
| 21480 | R | type I site-specific deoxyribonuclease, HsdR | TspJC4ORF21460P | |
| 21490 | 96 aa hypothetical protein | |||
| 21620 | transcriptional regulator | |||
| 21630 | M | M.TruRU1ORF7445P (95% identity) | M.TspJC4ORF21630P | |
| 21640 | BRO family protein | |||
| 21650 | S | S.PmeBin327ORFBP (33% identity) | S.TspJC4ORF21630P | |
| 21660 | 185 aa hypothetical protein | |||
| 22270 | S | S1.EbaI46ORF10775P (63% identity) | S.TspJC4ORF22290P | |
| 22280 | 264 aa hypothetical protein | |||
| 22290 | M | M.PsuFMUORF2305P (77% identity) | M.TspJC4ORF22290P | |
| 22300 | 81 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1170 | pseudouridine synthase | |||
| 1180 | M | M.Tbr32280ORF22880P (76% identity) | M.TspJC4ORF1180P | |
| 1190 | Fe-S-cluster oxidoreductase | |||
| 8670 | 3-phosphoshikimate 1-carboxyvinyltransferase | |||
| 8680 | M | M.Tbr32280ORF6780P (65% identity) | GAATTC | M.TspJC4ORF8680P |
| 8690 | extracellular nuclease | |||
| ??? | M | M.Kan3317ORF38890P (30% identity) | CCGG | M.TspJC4ORFAP |
| 24880 | 129 aa hypothetical protein | |||
| 24890 | 70 aa hypothetical protein | |||
| ??? | V | V.TruRU1ORF1565P (78% identity) | V.TspJC4ORFAP | |
| 24900 | 134 aa hypothetical protein | |||
| 25970 | Acetyltransferase | |||
| 25980 | R | Bme285ORF27975P (32% identity) | TspJC4ORF25980P | |
| 25990 | 148 aa hypothetical protein | |||
| ??? | M | DNA cytosine methylase | CCGG | M.TspJC4ORFBP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19330 | 236 aa hypothetical protein | |||
| 19340 | M | M.Tsp160ORF1040P (49% identity) | M.TspJC4ORF19340P | |
| 19350 | 442 aa hypothetical protein | |||