Helicobacter cinaedi ATCC BAA-847 |
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Putative Helicobacter cinaedi ATCC BAA-847 RM systems
Ref: Akiyama,T. et al. unpublished
REBASE ref # 15009
Complete sequence: 2,240,130 bp
GenBank #: AP012492
REBASE acronym: Hci
Org_num: 9134
All begin HCBAA847_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2277 | cation diffusion facilitator family transporter | |||
| 2278 | R | Hci18818ORFHP (100% identity) | HciORF2281P | |
| 2279 | 206 aa conserved hypothetical protein | |||
| 2280 | S | S.Hci798ORFFP (100% identity) | S.HciORF2281P | |
| 2281 | M | M.Hci7095ORF10505P (100% identity) | M.HciORF2281P | |
| 2282 | 175 aa conserved hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 27 | NADP-dependent alcohol dehydrogenase | |||
| ??? | RM | Hci18818ORFFP (98% identity) | GAGNNNNNGT | HciORF28P |
| 31 | 256 aa conserved hypothetical protein | |||
| 99 | RNA polymerase factor sigma-54 | |||
| 100 | R | Hci18818ORFDP (88% identity) | CATG | HciORF102P |
| 101 | 95 aa hypothetical protein | |||
| 102 | M | M.Hci798ORFWP (100% identity) | CATG | M.HciORF102P |
| 103 | 30S ribosomal protein S2 | |||
| 385 | 142 aa hypothetical protein | |||
| 386 | M | M.HciP01DORFBP (100% identity) | CCWGG | M.HciORF386P |
| 387 | 249 aa conserved hypothetical protein | |||
| 472 | NifU-like protein | |||
| 473 | R | Hci7095ORF7670P (100% identity) | GCGC | HciORF474P |
| 474 | M | M.HciP01DORFZP (100% identity) | GCGC | M.HciORF474P |
| 475 | cysteine desulfurase | |||
| 740 | cell division protein | |||
| 741 | M | M.Hci7095ORF6385P (100% identity) | TCGA | M.HciORF741P |
| 742 | R | Hci7095ORF6385P (100% identity) | TCGA | HciORF741P |
| 743 | flagellin modification protein | |||
| 783 | HNH endonuclease domain-containing protein | |||
| ??? | M | M.Hci798ORFRP (100% identity) | CCGG | M.HciORF784P |
| 786 | 54 aa hypothetical protein | |||
| 786 | 54 aa hypothetical protein | |||
| 787 | M | M.Hci798ORFSP (94% identity) | M.HciORF787P | |
| 788 | 222 aa conserved hypothetical protein | |||
| 790 | cysteine synthase | |||
| ??? | R | Hci18818ORFPP (100% identity) | GATC | HciORF793P |
| ??? | M | M.Hci7095ORF6145P (100% identity) | GATC | M.HciORF793P |
| 795 | cystathionine gamma-synthase | |||
| 920 | poly(A) polymerase | |||
| 921 | R | Hci7095ORF5530P (99% identity) | GTAC | HciORF922P |
| 922 | M | M.Hci7095ORF5530P (100% identity) | GTAC | M.HciORF922P |
| 923 | GMP synthase | |||
| 939 | 591 aa conserved hypothetical protein | |||
| 940 | M | M.Hci7095ORF5440P (99% identity) | GANTC | M.HciORF940P |
| 941 | RDD family protein | |||
| 1046 | arginyl-tRNA-protein transferase | |||
| 1047 | RM | Hci18818ORFWP (100% identity) | HciORF1047P | |
| 1048 | 47 aa conserved hypothetical protein | |||
| 1071 | Na+/H+ antiporter | |||
| ??? | RM | Hci1432ORFRP (100% identity) | HciORF1073P | |
| 1075 | 319 aa conserved hypothetical protein | |||
| ??? | 1527 aa hypothetical protein | |||
| 1075 | RM | Hci18818ORFVP (100% identity) | HciORF1075P | |
| 1076 | lipoprotein signal peptidase | |||
| 1541 | 51 aa hypothetical protein | |||
| 1542 | R | Hci798ORFDP (100% identity) | GATC | HciORF1543P |
| 1543 | M | M.Hci1432ORFBP (100% identity) | GATC | M.HciORF1543P |
| 1544 | 162 aa hypothetical protein | |||
| 1772 | 73 aa conserved hypothetical protein | |||
| 1773 | RM | Hci7095ORF1555P (100% identity) | HciORF1773P | |
| 1774 | 242 aa hypothetical protein | |||
| 1921 | truncated hypothetical protein | |||
| ??? | RM | Hci7095ORF810P (100% identity) | HciORF1922P | |
| 1924 | 173 aa hypothetical protein | |||
| 1951 | Mec-2 family protein | |||
| 1952 | R | Hci7095ORF660P (99% identity) | GAAGA | HciORF1953P |
| 1953 | M | M2.Hci7095ORF660P (100% identity) | GAAGA | M1.HciORF1953P |
| ??? | M | M2.Hci1432ORFUP (100% identity) | GAAGA | M2.HciORF1953P |
| 1956 | 575 aa hypothetical protein | |||
| 1955 | 53 aa conserved hypothetical protein | |||
| 1956 | R | Hci7095ORF645P (100% identity) | HciORF1958P | |
| 1957 | DNA methyltransferase C1 | |||
| 1958 | M | M.HciP01DORFMP (100% identity) | ACTGG | M.HciORF1958P |
| 1959 | alanyl-tRNA synthetase | |||
| 2075 | 53 aa hypothetical protein | |||
| 2076 | M | M.Hci7095ORF60P (100% identity) | GCNNGC | M.HciORF2076P |
| 2077 | R | Hci7095ORF60P (100% identity) | GCNNGC | HciORF2076P |
| 2078 | L-fuculose-1-phosphate aldolase | |||
| 2194 | 84 aa hypothetical protein | |||
| 2195 | R | CupORF1489P (16% identity) | HciORF2194P | |
| 2196 | modification methylase | |||
| 2195 | 92 aa hypothetical protein | |||
| 2196 | M | M.Hci798ORFIP (100% identity) | CGWCG | M.HciORF2196P |
| 2197 | R | Hci798ORFIP (100% identity) | CGWCG | HciORF2196P |
| 2198 | modification methylase | |||
| 2197 | 191 aa conserved hypothetical protein | |||
| 2198 | M | M1.Hci798ORFJP (100% identity) | GGATG | M1.HciORF2198P |
| 2199 | M | M2.Hci798ORFJP (90% identity) | GGATG | M2.HciORF2198P |
| 2200 | 382 aa conserved hypothetical protein | |||
| 2271 | cell division inhibitor | |||
| 2272 | R | HciP01DORFGP (100% identity) | TCNNGA | HciORF2273P |
| 2273 | M | M.HciP01DORFGP (100% identity) | TCNNGA | M.HciORF2273P |
| 2274 | argininosuccinate synthase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 60 | saccharopine dehydrogenase | |||
| 61 | M | M.Hci7095ORF9755P (100% identity) | M.HciORF61P | |
| 62 | ATPase | |||
| 63 | DNA binding protein | |||
| 64 | R | Hci18818ORFEP (100% identity) | HciORF61P | |
| 65 | 585 aa conserved hypothetical protein | |||
| 1428 | 270 aa hypothetical protein | |||
| 1429 | R | Hci1432ORFSP (100% identity) | HciORF1430P | |
| 1430 | M | M.Hci7095ORF3055P (100% identity) | M.HciORF1430P | |
| 1431 | 130 aa hypothetical protein | |||
| 2190 | 100 aa hypothetical protein | |||
| 2191 | M | M.HciP01DORFIP (100% identity) | M.HciORF2191P | |
| 2192 | R | Hci7095ORF10960P (100% identity) | HciORF2191P | |
| 2193 | MerR family transcription regulator | |||