Flexibacter litoralis DSM 6794 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Flexibacter litoralis DSM 6794 RM systems
Ref: Lucas,S. et al. unpublished
REBASE ref # 14632
Complete sequence: 4,919,337 bp
GenBank #: CP003345
REBASE acronym: Fli6794
Org_num: 8974
All begin Fleli_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 171 | 226 aa hypothetical protein | |||
| 172 | M | M.Wba2422ORFBP (64% identity) | GATNNNNNNNNTTGG | M.Fli6794I |
| 173 | S | S2.Mda10076ORF18740P (52% identity) | GATNNNNNNNNTTGG | S.Fli6794I |
| 174 | R | Fba311ORF24900P (65% identity) | GATNNNNNNNNTTGG | Fli6794IP |
| 175 | 49 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 272 | 47 aa hypothetical protein | |||
| 273 | R | Cal14237McrBP (82% identity) | Fli6794McrBP | |
| 274 | 166 aa hypothetical protein | |||
| 692 | Protein of unknown function DUF262 | |||
| 693 | M | M.Csp1BORFAP (56% identity) | AAGCTT | M.Fli6794ORF693P |
| 694 | protein of unknown function (DUF1835) | |||
| 776 | 415 aa hypothetical protein | |||
| 777 | M | M.Bsp2BORF15895P (89% identity) | CATG | M.Fli6794III |
| 778 | riboflavin kinase/FMN adenylyltransferase | |||
| 849 | RRM domain-containing RNA-binding protein | |||
| 850 | RM | BspMNPM8ORF3460P (89% identity) | Fli6794ORF850P | |
| 851 | Co-chaperonin GroES | |||
| 1079 | dihydroorotase, multifunctional complex type | |||
| 1080 | M | M.BspMNPM8ORF1900P (93% identity) | GGCC | M.Fli6794ORF1080P |
| 1081 | R | BspMNPM8ORF1900P (87% identity) | GGCC | Fli6794ORF1080P |
| 1082 | P-type ATPase, translocating | |||
| 1083 | 218 aa hypothetical protein | |||
| 1084 | RM | Bspy2ORF13165P (88% identity) | Fli6794ORF1084P | |
| 1085 | RNA polymerase sigma factor, sigma-70 family | |||
| 1207 | DNA polymerase elongation subunit (family B) | |||
| 1208 | RM | Psp172ORF7660P (51% identity) | Fli6794ORF1208P | |
| 1209 | 106 aa hypothetical protein | |||
| 1287 | urocanate hydratase | |||
| 1288 | R | Orh223ORF7270P (74% identity) | GTYRAC | Fli6794IIP |
| 1289 | M | M.Orh223ORF7270P (56% identity) | GTYRAC | M.Fli6794II |
| 1290 | 258 aa hypothetical protein | |||
| 1400 | 3-hydroxyacyl-CoA dehydrogenase | |||
| ??? | M | M.Bsp2BORF7910P (19% identity) | CCGG | M.Fli6794ORF1402P |
| 1404 | 533 aa hypothetical protein | |||
| 1541 | 23S RNA-specific pseudouridylate synthase | |||
| 1542 | M | M.Ran133ORF405P (68% identity) | M.Fli6794ORF1542P | |
| 1543 | 373 aa hypothetical protein | |||
| 1788 | DNA sulfur modification protein DndE | |||
| 1790 | M | M.Csh13533DndDP (55% identity) | M.Fli6794DndDP | |
| 1791 | restriction endonuclease | |||
| 1818 | ABC-type Mn2+/Zn2+ transport system, permease | |||
| 1819 | R | TdiTDORF7660P (87% identity) | GGNCC | Fli6794ORF1820P |
| 1820 | M | M.TfiFM3FORF7725P (85% identity) | GGNCC | M.Fli6794ORF1820P |
| 1821 | 227 aa hypothetical protein | |||
| 2134 | Uncharacterized protein | |||
| 2135 | M | M.Bsp2BORF15610P (89% identity) | AAGCTT | M.Fli6794ORF2135P |
| 2136 | 148 aa hypothetical protein | |||
| 2207 | geranylgeranyl pyrophosphate synthase | |||
| 2208 | R | FpsVQ50ORF4080P (66% identity) | CGCG | Fli6794ORF2209P |
| 2209 | M | M.AspG270ORFDP (72% identity) | CGCG | M.Fli6794ORF2209P |
| 2210 | DNA/RNA helicase, superfamily II, SNF2 family | |||
| 2222 | Mg-chelatase subunit ChlD | |||
| 2223 | R | EsaSS2017ORFAP (49% identity) | R1.Fli6794ORF2225P | |
| 2224 | R | MruORF26P (17% identity) | R2.Fli6794ORF2225P | |
| 2225 | M | M1.EsaSS157ORFAP (53% identity) | M1.Fli6794ORF2225P | |
| 2226 | M | M1.Ast1581ORFEP (60% identity) | M2.Fli6794ORF2225P | |
| 2227 | Uncharacterized protein | |||
| 2328 | MORN repeat protein | |||
| 2329 | C | C.FbaRR440ORF3530P (100% identity) | C.Fli6794IVP | |
| 2330 | M | M1.FbaRR440ORF3530P (95% identity) | GGTGA | M2.Fli6794IVP |
| 2331 | M | M2.FbaRR440ORF3530P (97% identity) | GGTGA | M1.Fli6794IV |
| 2332 | R | FspCS20ORF5140P (84% identity) | GGTGA | Fli6794IVP |
| 2333 | 126 aa hypothetical protein | |||
| 2890 | triosephosphate isomerase | |||
| ??? | RM | SumRL3ORF1145AP (39% identity) | Fli6794ORF2891AP | |
| 2892 | transposase | |||
| ??? | RM | M.Bsp2BORF18855P (65% identity) | Fli6794ORF2891BP | |
| 2893 | S23 ribosomal protein | |||
| 3127 | arginyl-tRNA:protein | |||
| 3128 | RM | PspQ13ORF6225P (66% identity) | Fli6794ORF3128P | |
| 3129 | DNA/RNA helicase, superfamily II | |||
| 3343 | ATPase involved in chromosome partitioning | |||
| 3344 | RM | type I restriction-modification system | Fli6794ORF3344P | |
| 3345 | dehydrogenase | |||
| 3567 | 196 aa hypothetical protein | |||
| 3569 | RM | Bsp2BORF3955P (59% identity) | Fli6794ORF3569P | |
| 3570 | permease | |||
| 3604 | 478 aa hypothetical protein | |||
| 3605 | RM | Fli6794ORF3344P (51% identity) | Fli6794ORF3605P | |
| 3606 | membrane protein (DUF2339) | |||
| 3616 | pyruvate carboxylase | |||
| 3617 | M | M.BspMNPM8ORF19095P (86% identity) | GATC | M1.Fli6794ORF3617P |
| 3618 | 178 aa hypothetical protein | |||
| 3619 | M | M1.Cbo19482ORF3256P (67% identity) | GATC | M2.Fli6794ORF3617P |
| 3620 | copper chaperone | |||
| 3643 | superoxide dismutase | |||
| 3644 | RM | Bsp2BORF4455P (67% identity) | Fli6794ORF3644P | |
| 3646 | inositol | |||
| 3795 | 614 aa hypothetical protein | |||
| 3796 | RM | Cab13497ORF1978P (19% identity) | Fli6794ORF3796P | |
| 3800 | Rhodanese-related sulfurtransferase | |||
| 3873 | dipeptidyl aminopeptidase/acylaminoacyl | |||
| 3874 | RM | BspMNPM8ORF19980P (70% identity) | Fli6794ORF3874P | |
| 3875 | subtilisin-like serine protease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1115 | DNA replication and repair protein RecN | |||
| 1116 | R | Pre8TMrrP (77% identity) | Fli6794MrrP | |
| 1117 | carboxynorspermidine decarboxylase | |||