Helicobacter pylori XZ274 |
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Putative Helicobacter pylori XZ274 RM systems
Ref: Guo,Y. et al. unpublished
REBASE ref # 14733
Complete sequence: 1,634,138 bp
GenBank #: CP003419
REBASE acronym: Hpy274
Org_num: 8908
All begin MWE_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 522 | polyphosphate kinase | |||
| 524 | S | S.HpyCA6III (97% identity) | S.Hpy274ORF526P | |
| 526 | M | M.HpySG26ORF3930P (97% identity) | M.Hpy274ORF526P | |
| 527 | R | Hpy2099ORF2290P (85% identity) | Hpy274ORF526P | |
| 529 | 582 aa hypothetical protein | |||
| 588 | 228 aa hypothetical protein | |||
| ??? | M | M.HpyCHN6ORF4140P (96% identity) | M.Hpy274ORF589P | |
| 591 | S | S.Hpy169ORF4350P (72% identity) | S.Hpy274ORF589P | |
| 592 | R | HpyJ009ORF2695P (97% identity) | Hpy274ORF589P | |
| 593 | hydroxyethylthiazole kinase | |||
| 656 | cadmium, zinc and cobalt-transporting ATPase | |||
| 657 | S | S.HpySW18ORF2470P (96% identity) | S.Hpy274ORF657P | |
| 658 | outer membrane protein HofF | |||
| 1721 | 43 aa hypothetical protein | |||
| 1722 | S | S.HpyJA112VII (97% identity) | S.Hpy274ORF1723P | |
| ??? | M | M.HpyK119ORF7290P (92% identity) | M.Hpy274ORF1723P | |
| 1725 | R | Hpybs3ORFKP (92% identity) | Hpy274ORF1723P | |
| 1726 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 44 | 46 aa hypothetical protein | |||
| 45 | M | M2.HpyU204VIII (99% identity) | GAAGA | M1.Hpy274ORF45P |
| 46 | M | M1.HpyHK711ORFKP (97% identity) | GAAGA | M2.Hpy274ORF45P |
| 47 | R | HpyK045VIP (98% identity) | GAAGA | Hpy274ORF45P |
| 48 | transcriptional regulator | |||
| 60 | nicotinate-nucleotide pyrophosphorylase | |||
| 61 | RM | HpySG19ORF250P (82% identity) | Hpy274ORF61P | |
| 66 | adenine specific DNA methyltransferase (HINFIM) | |||
| 61 | 1292 aa hypothetical protein N204_05600 | |||
| 66 | M | M.Hpyfe99ORF7240P (100% identity) | GANTC | M.Hpy274ORF66P |
| 67 | R | Hpyfe124ORF6820P (99% identity) | GANTC | Hpy274ORF66P |
| 68 | carboxyl-terminal processing protease | |||
| 77 | 53 aa hypothetical protein N199_01600 | |||
| 78 | M | M1.HpyCA20IV (98% identity) | CCTC | M1.Hpy274ORF78P |
| 79 | M | M2.HpyK034IIIP (98% identity) | CCTC | M2.Hpy274ORF78P |
| ??? | R | HpyML2ORFHP (82% identity) | CCTC | Hpy274ORF78P |
| 82 | adenine/cytosine DNA methyltransferase | |||
| ??? | restriction endonuclease | |||
| 82 | M | M.Hpy4109ORFKP (61% identity) | CCTTC | M.Hpy274ORF82P |
| 83 | symporter, SSS family (proline permease) | |||
| 181 | alpha-1,2-fucosyltransferase, partial | |||
| 182 | M | M.HpyK029VII (98% identity) | GATC | M.Hpy274ORF182P |
| 183 | R | HpyF211ORF143P (97% identity) | GATC | Hpy274ORF182P |
| 185 | acyl-carrier-protein S-malonyltransferase | |||
| 337 | exodeoxyribonuclease VII large subunit | |||
| 338 | R | Hpyfe83ORF5770P (93% identity) | CCGG | Hpy274ORF339P |
| 339 | M | adenine specific DNA methyltransferase (hpaim) | CCGG | M.Hpy274ORF339P |
| 340 | ATP-dependent protease binding subunit (ClpB) | |||
| 548 | 599 aa hypothetical protein | |||
| 549 | M | M.HpyMA05III (99% identity) | ACNGT | M.Hpy274ORF549P |
| ??? | R | HpyK105ORF2455P (79% identity) | ACNGT | Hpy274ORF549P |
| 552 | type II DNA modification enzyme | |||
| ??? | type II restriction endonuclease | |||
| 552 | M | M.Hpyfe52ORF4760P (97% identity) | ACGT | M.Hpy274ORF552P |
| 553 | R | HpyID9ORF2245P (87% identity) | ACGT | Hpy274ORF552P |
| 554 | 54 aa hypothetical protein | |||
| 622 | osmoprotection protein (proWX) | |||
| 623 | M | M.Hpyfe8ORF2470P (99% identity) | CGWCG | M.Hpy274ORF623P |
| 624 | R | Hpyfe78ORF3885P (99% identity) | CGWCG | Hpy274ORF623P |
| 625 | osmoprotection protein | |||
| 817 | 133 aa hypothetical protein | |||
| 818 | R | HpyJ026ORF3390P (98% identity) | GGNNCC | Hpy274ORF819P |
| 819 | M | M.HpyTN2ORF7450P (100% identity) | GGNNCC | M.Hpy274ORF819P |
| 820 | 270 aa hypothetical protein | |||
| 837 | 59 aa hypothetical protein | |||
| 838 | RM | HpyJ022ORF3310P (57% identity) | Hpy274ORF838P | |
| 839 | 606 aa hypothetical protein | |||
| 838 | helicase domain protein | |||
| 839 | RM | Hpyfe124ORF3675P (36% identity) | Hpy274ORF839P | |
| 840 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
| 1019 | outer membrane protein | |||
| ??? | R | Hpy4109ORFWP (88% identity) | GTAC | Hpy274ORF1022P |
| 1022 | M | M.HpyP94ORFQP (98% identity) | GTAC | M.Hpy274ORF1022P |
| 1023 | DNA gyrase subunit B | |||
| 1064 | flagellar hook protein FlgE | |||
| 1065 | R | HpyBT112ORF2780P (96% identity) | GTNNAC | Hpy274ORF1066P |
| 1066 | M | M.HpyC212IX (98% identity) | GTNNAC | M.Hpy274ORF1066P |
| 1068 | rep helicase, single-stranded DNA-dependent | |||
| 1261 | biotin carboxylase | |||
| 1262 | M | M.HpyYN483ORFVP (99% identity) | TCNNGA | M.Hpy274ORF1262P |
| 1264 | R | 164 aa hypothetical protein | TCNNGA | Hpy274ORF1262P |
| 1265 | pseudogene | |||
| 1304 | 156 aa hypothetical protein | |||
| 1305 | M | M.Hpyfe13ORF2040P (97% identity) | GCGC | M.Hpy274ORF1305P |
| 1306 | 76 aa hypothetical protein | |||
| 1408 | 222 aa hypothetical protein | |||
| 1409 | M | M.Hpyfe59ORF1420P (97% identity) | CATG | M.Hpy274ORF1409P |
| 1410 | R | HpyOK115ORFAP (91% identity) | CATG | Hpy274ORF1409P |
| 1411 | serine acetyltransferase | |||
| 1657 | DNA polymerase I (PolA) | |||
| 1658 | S | 75 aa hypothetical protein | S.Hpy274ORF1659P | |
| ??? | RM | Hpy86ORF580P (97% identity) | Hpy274ORF1659P | |
| 1661 | 185 aa hypothetical protein | |||
| 1702 | transcription elongation factor NusA | |||
| 1703 | RM | type II S restriction-modification protein | Hpy274ORF1703P | |
| 1704 | type IIS restriction-modification protein, partial | |||
| 1703 | type II S restriction-modification protein | |||
| 1704 | RM | Hpyfe104ORF55P (65% identity) | Hpy274ORF1704P | |
| 1705 | type III restriction enzyme | |||
| 1746 | 68 aa hypothetical protein | |||
| 1747 | M | M.HpySG14ORF7415P (97% identity) | TGCA | M.Hpy274ORF1747P |
| 1748 | R | HpyLI25VP (97% identity) | TGCA | Hpy274ORF1747P |
| 1749 | 76 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 40 | rod shape-determining protein MreC | |||
| 41 | R | HpyP98ORFOP (93% identity) | Hpy274ORF42P | |
| ??? | M | M.HpyF226ORFKP (96% identity) | M.Hpy274ORF42P | |
| 44 | 46 aa hypothetical protein | |||
| 1573 | 42 aa hypothetical protein | |||
| 1574 | M | M.HpyK109ORF6600P (91% identity) | M.Hpy274ORF1574P | |
| 1575 | R | Hpy66ORF795P (91% identity) | Hpy274ORF1574P | |
| 1576 | pseudogene | |||
| 1704 | type IIS restriction-modification protein, partial | |||
| 1705 | R | Hpyfe53ORF3460P (97% identity) | Hpy274ORF1706P | |
| ??? | M | M.Hpyfe64ORF40P (96% identity) | M.Hpy274ORF1706P | |
| 1708 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1010 | 50S ribosomal protein L9 | |||
| 1011 | R | HpyCHN7GmrSDP (52% identity) | Hpy274GmrSDBP | |
| 1012 | R | HpyC124GmrSDP (32% identity) | Hpy274GmrSDAP | |
| 1013 | glutamine synthetase (glutamate--ammonia | |||