Helicobacter cinaedi PAGU611 |
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Putative Helicobacter cinaedi PAGU611 RM systems
Ref: Goto,T. et al. unpublished
REBASE ref # 14667
Complete sequence: 2,078,348 bp
GenBank #: AP012344
REBASE acronym: Hci611
Org_num: 8757
All begin HCN_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 33 | NADP-dependent alcohol dehydrogenase | |||
| 34 | RM | Hci1234ORF380P (77% identity) | GAGNNNNNGT | Hci611ORFHP |
| 35 | 256 aa conserved hypothetical protein | |||
| 105 | RNA polymerase factor sigma-54 | |||
| 106 | R | Hci629ORFAP (100% identity) | CATG | Hci611ORFFP |
| 107 | M | M.Hci629ORFAP (100% identity) | CATG | M.Hci611ORFFP |
| 108 | 30S ribosomal protein S2 | |||
| 368 | 142 aa hypothetical protein | |||
| 369 | M | M.HciP01DORFBP (100% identity) | CCWGG | M.Hci611ORF369P |
| 370 | 249 aa conserved hypothetical protein | |||
| 449 | NifU-like protein | |||
| 450 | R | HciP01DORFZP (100% identity) | GCGC | Hci611ORF451P |
| 451 | M | M.HciP01DORFZP (100% identity) | GCGC | M.Hci611ORF451P |
| 452 | cysteine desulfurase | |||
| 902 | lipoprotein signal peptidase | |||
| ??? | RM | Hci7095ORF4820P (99% identity) | Hci611ORF903P | |
| 905 | 880 aa conserved hypothetical protein | |||
| 929 | 100 aa conserved hypothetical protein | |||
| 930 | RM | Hci629ORFCP (99% identity) | Hci611ORFEP | |
| 931 | arginyl-tRNA-protein transferase | |||
| 1033 | RDD family protein | |||
| 1034 | M | M.Hci7095ORF5440P (100% identity) | GANTC | M.Hci611ORF1034P |
| 1035 | 591 aa conserved hypothetical protein | |||
| 1051 | GMP synthase | |||
| 1052 | R | HciP01DORFTP (100% identity) | GTNNAC | Hci611ORFDP |
| 1053 | M | M.HciP01DORFTP (97% identity) | GTNNAC | M.Hci611ORFDP |
| 1054 | 377 aa conserved hypothetical protein | |||
| ??? | type II R-M system DNA modification enzyme | |||
| 1054 | M | M.HciP01DORFSP (95% identity) | GTAC | M.Hci611ORF1054P |
| 1055 | R | Hci629ORFSP (100% identity) | GTAC | Hci611ORF1054P |
| 1056 | poly A polymerase | |||
| 1173 | cystathionine gamma-synthase | |||
| ??? | M | M.HciP01DORFYP (100% identity) | GATC | M.Hci611ORF1174P |
| 1176 | R | 143 aa conserved hypothetical protein | GATC | Hci611ORF1174P |
| 1177 | 52 aa conserved hypothetical protein | |||
| 1178 | cysteine synthase | |||
| 1179 | M | M.HciP01DORFXP (84% identity) | GCNGC | M.Hci611ORF1179P |
| 1180 | R | HciP01DORFXP (100% identity) | GCNGC | Hci611ORF1179P |
| 1181 | 357 aa hypothetical protein | |||
| 1395 | 51 aa hypothetical protein | |||
| 1396 | R | HciP01DORFDP (98% identity) | GATC | Hci611ORF1397P |
| 1397 | M | M.HciP01DORFDP (98% identity) | GATC | M.Hci611ORF1397P |
| 1398 | 344 aa hypothetical protein | |||
| 1469 | 53 aa hypothetical protein | |||
| 1470 | R | Hci629ORFNP (89% identity) | Hci611ORF1471P | |
| 1471 | M | M1.Hci629ORFNP (100% identity) | GCATC | M1.Hci611ORF1471P |
| 1472 | M | M2.Hci629ORFNP (100% identity) | GCATC | M2.Hci611ORF1471P |
| 1473 | 44 aa hypothetical protein | |||
| 1547 | 201 aa conserved hypothetical protein | |||
| 1548 | RM | Hci798ORFNP (79% identity) | Hci611ORF1548P | |
| 1549 | DEAD/DEAH box helicase-like protein | |||
| 1686 | 106 aa conserved hypothetical protein | |||
| 1687 | RM | Hci798ORFMP (97% identity) | Hci611ORF1687P | |
| 1688 | 173 aa hypothetical protein | |||
| 1713 | band 7/Mec-2 family protein | |||
| ??? | R | Hci629ORFJP (50% identity) | GAAGA | Hci611ORF1714P |
| ??? | M | Hci629ORFJP (100% identity) | GAAGA | M.Hci611ORF1714P |
| 1719 | 54 aa conserved hypothetical protein | |||
| 1713 | band 7/Mec-2 family protein | |||
| ??? | R | Hci629ORFJP (50% identity) | GAAGA | Hci611ORF1716P |
| ??? | M | M1.Hci629ORFJP (98% identity) | GAAGA | M1.Hci611ORF1716P |
| 1718 | M | M2.HciP01DORFLP (65% identity) | GAAGA | M2.Hci611ORF1716P |
| 1720 | 385 aa hypothetical protein | |||
| 1719 | 54 aa conserved hypothetical protein | |||
| 1720 | R | HpyU435XIIIP (75% identity) | Hci611ORF1721P | |
| 1721 | M | M.Hci629ORFKP (100% identity) | M.Hci611ORF1721P | |
| 1722 | alanyl-tRNA synthetase | |||
| 1751 | 134 aa hypothetical protein | |||
| 1752 | M | M.Hci629ORFEP (100% identity) | GTSAC | M.Hci611ORFBP |
| 1753 | R | Hci629ORFEP (100% identity) | GTSAC | Hci611ORFBP |
| 1754 | 211 aa conserved hypothetical protein | |||
| 1791 | 53 aa hypothetical protein | |||
| 1792 | M | M.HciORF2076P (100% identity) | GCNNGC | M.Hci611ORF1792P |
| 1793 | R | HciORF2076P (99% identity) | GCNNGC | Hci611ORF1792P |
| 1794 | L-fuculose-1-phosphate aldolase | |||
| 2012 | cell division inhibitor MinD | |||
| 2013 | R | Hci629ORFGP (100% identity) | TCNNGA | Hci611ORF2014P |
| 2014 | M | M.Hci629ORFGP (100% identity) | TCNNGA | M.Hci611ORF2014P |
| 2015 | argininosuccinate synthase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 65 | saccharopine dehydrogenase | |||
| 66 | M | M.HciP01DORFB1P (98% identity) | M.Hci611ORFGP | |
| 67 | ATPase | |||
| 68 | DNA binding protein | |||
| 69 | R | Hci7095ORF9755P (99% identity) | Hci611ORFGP | |
| 70 | 244 aa conserved hypothetical protein | |||
| 1355 | 270 aa hypothetical protein | |||
| 1356 | R | Hci1234ORF14360P (100% identity) | AGACC | Hci611ORFCP |
| 1357 | M | M.HciP01DORFOP (96% identity) | AGACC | M.Hci611ORFCP |
| 1358 | 130 aa hypothetical protein | |||
| 1902 | 100 aa hypothetical protein | |||
| ??? | M | M.Hci629ORFIP (93% identity) | M.Hci611ORFAP | |
| ??? | R | Hci629ORFIP (99% identity) | Hci611ORFAP | |
| 1906 | MerR family transcription regulator | |||