Helicobacter pylori PeCan18 |
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Putative Helicobacter pylori PeCan18 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 14429
Complete sequence: 1,660,685 bp
GenBank #: CP003475
REBASE acronym: Hpy18
Org_num: 8767
All begin HPPC18_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2165 | polyphosphate kinase | |||
| 2170 | S | S.HpyC007ORF2365P (98% identity) | S.Hpy18ORF2175P | |
| ??? | M | M.HpyI019ORF2170P (94% identity) | M.Hpy18ORF2175P | |
| ??? | R | HpyU001ORF2175P (90% identity) | Hpy18ORF2175P | |
| 2195 | 631 aa hypothetical protein | |||
| 3895 | outer membrane protein | |||
| 3900 | S | S.HpyDO8ORF3600P (96% identity) | S.Hpy18ORF3900P | |
| 3905 | cadmium-transporting ATPase | |||
| 4170 | hydroxyethylthiazole kinase | |||
| 4175 | R | HpyU311ORF4185P (95% identity) | CAYNNNNNRTC | Hpy18ORF4185P |
| 4180 | S | S.HpySP803XVI (97% identity) | CAYNNNNNRTC | S.Hpy18ORF4185P |
| ??? | M | M.Hpy94ORF4385P (88% identity) | CAYNNNNNRTC | M.Hpy18ORF4185P |
| 4195 | 225 aa hypothetical protein | |||
| 6910 | 235 aa hypothetical protein | |||
| 6915 | R | HpySH007ORF7295P (98% identity) | Hpy18ORF6920P | |
| ??? | M | M.HpyPE103ORF7520P (98% identity) | M.Hpy18ORF6920P | |
| 6930 | S | S.HpyF019XII (91% identity) | S.Hpy18ORF6920P | |
| 6935 | 51 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 225 | 330 aa hypothetical protein | |||
| 230 | M | M1.HpyU420V (98% identity) | CCTC | M1.Hpy18ORF230P |
| 235 | M | M2.HpyGM7VIP (93% identity) | CCTC | M2.Hpy18ORF230P |
| 240 | 419 aa hypothetical protein | |||
| 235 | type II DNA modification enzyme | |||
| 240 | R | HpyGM7VIIP (98% identity) | CCTTC | Hpy18ORF245P |
| 245 | M | M.HpyC021XIII (96% identity) | CCTTC | M.Hpy18ORF245P |
| 250 | sodium/proline symporter | |||
| 465 | malonyl CoA-acyl carrier protein transacylase | |||
| ??? | R | HpyDO3VIIIP (77% identity) | GATC | Hpy18ORF480P |
| 480 | M | M.HpyAL8IX (96% identity) | GATC | M.Hpy18ORF480P |
| 495 | 176 aa hypothetical protein | |||
| 1295 | exodeoxyribonuclease VII large subunit | |||
| 1300 | M | M.HpyLIM5X (98% identity) | TCGA | M.Hpy18ORF1300P |
| 1305 | 204 aa hypothetical protein | |||
| 1305 | 204 aa hypothetical protein | |||
| 1310 | R | HpyH023VIIP (98% identity) | CCGG | Hpy18ORF1315P |
| 1315 | M | M.HpyGM3V (100% identity) | CCGG | M.Hpy18ORF1315P |
| 1320 | heat shock protein | |||
| 1560 | 293 aa hypothetical protein | |||
| 1565 | R | HpyPU006VIP (95% identity) | CTNAG | Hpy18ORF1570P |
| 1570 | M | M.HpyPOR113V (98% identity) | CTNAG | M.Hpy18ORF1570P |
| 1575 | 122 aa hypothetical protein | |||
| 2265 | GTP-binding protein TypA | |||
| ??? | M | M.HpyBR18ORF2255P (98% identity) | ACNGT | M.Hpy18ORF2270P |
| 2280 | R | HpyPR05ORF2280P (79% identity) | ACNGT | Hpy18ORF2270P |
| 2285 | type II DNA modification (methyltransferase) | |||
| 2280 | 165 aa hypothetical protein | |||
| 2285 | M | M.HpyNCI18ORFUP (99% identity) | ACGT | M.Hpy18ORF2285P |
| ??? | R | HpyU311ORF2330P (95% identity) | ACGT | Hpy18ORF2285P |
| 2305 | catalase-like protein | |||
| 2390 | DNA gyrase subunit B | |||
| 2395 | M | M.HpyME40IX (98% identity) | GTAC | M.Hpy18ORF2395P |
| ??? | R | HpyCOL306IXP (91% identity) | GTAC | Hpy18ORF2395P |
| 2410 | outer membrane protein | |||
| 3225 | glycerol-3-phosphate dehydrogenase | |||
| 3230 | RM | 361 aa hypothetical protein | Hpy18ORF3230P | |
| 3235 | 1264 aa hypothetical protein | |||
| 3230 | 361 aa hypothetical protein | |||
| 3235 | RM | HpyC110ORF4285P (70% identity) | Hpy18ORF3235P | |
| 3240 | 117 aa hypothetical protein | |||
| 3355 | 270 aa hypothetical protein | |||
| ??? | M | M.HpyC018ORF3620P (99% identity) | CCNNGG | M.Hpy18ORF3360P |
| 3370 | R | HpyU206ORF3295P (100% identity) | CCNNGG | Hpy18ORF3360P |
| 3375 | 166 aa hypothetical protein | |||
| 4460 | flagellar hook protein FlgE | |||
| 4465 | R | HpyME01XP (97% identity) | GTNNAC | Hpy18ORF4470P |
| 4470 | M | M.HpyU301X (99% identity) | GTNNAC | M.Hpy18ORF4470P |
| 4475 | ATP-dependent helicase | |||
| 5365 | biotin carboxylase | |||
| 5370 | M | M.HpyPR05X (99% identity) | TCNNGA | M.Hpy18ORF5370P |
| 5375 | R | HpySP13XIP (99% identity) | TCNNGA | Hpy18ORF5370P |
| 5380 | 201 aa hypothetical protein | |||
| 5565 | 144 aa hypothetical protein | |||
| 5570 | M | M.HpyU409XV (98% identity) | GCGC | M.Hpy18ORF5570P |
| 5575 | 67 aa hypothetical protein | |||
| 6015 | 222 aa hypothetical protein | |||
| 6020 | M | M.HpyBR1I (99% identity) | CATG | M.Hpy18ORF6020P |
| 6025 | 59 aa hypothetical protein | |||
| 6750 | carboxyl-terminal protease | |||
| 6755 | R | HpyU203VIP (97% identity) | GANTC | Hpy18ORF6760P |
| 6760 | M | M.HpyPE124ORF5970P (99% identity) | GANTC | M.Hpy18ORF6760P |
| 6765 | 321 aa hypothetical protein | |||
| 6760 | type II DNA modification (methyltransferase) | |||
| 6765 | RM | 321 aa hypothetical protein | Hpy18ORF6765P | |
| 6770 | 808 aa hypothetical protein | |||
| 6765 | 321 aa hypothetical protein | |||
| 6770 | RM | HpyME45ORF6760P (69% identity) | Hpy18ORF6770P | |
| 6775 | nicotinate-nucleotide pyrophosphorylase | |||
| 6825 | transcriptional regulator | |||
| 6830 | R | Hpy380ORF3425P (97% identity) | GAAGA | Hpy18ORF6820P |
| 6835 | 67 aa hypothetical protein | |||
| 7010 | type III restriction enzyme | |||
| 7015 | RM | HpyBR3ORF6785P (93% identity) | Hpy18ORF7015P | |
| 7020 | 179 aa hypothetical protein | |||
| 7230 | 191 aa hypothetical protein | |||
| ??? | RM | Hpy274ORF1659P (95% identity) | Hpy18ORF7235P | |
| 7245 | S | S2.Hpy5006ORF3820P (96% identity) | S.Hpy18ORF7235P | |
| 7250 | DNA polymerase I | |||
| ??? | site-specific DNA-methyltransferase | |||
| 7690 | M | M.HpyPO04ORF7960P (82% identity) | GAAGA | M.Hpy18ORF7690P |
| 7695 | 79 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7000 | ATP-dependent DNA helicase RecG | |||
| 7005 | M | M.HpyU306ORF7085P (27% identity) | M.Hpy18ORF7005P | |
| 7010 | R | HpyBR2ORF6840P (95% identity) | Hpy18ORF7005P | |
| 7015 | type IIS R-M system restriction/modification | |||
| 7600 | biotin synthase | |||
| 7605 | R | HpyCOL201ORF4870P (87% identity) | Hpy18ORF7610P | |
| 7610 | M | M.HpySWT15ORF6640P (95% identity) | M.Hpy18ORF7610P | |
| 7615 | endonuclease G | |||
| 7665 | rod shape-determining protein MreC | |||
| ??? | R | HpyDO11ORF7490P (85% identity) | Hpy18ORF7680P | |
| ??? | M | M.HpySH011ORF6600P (95% identity) | M.Hpy18ORF7680P | |
| 7690 | type IIS restriction enzyme M2 protein (mod) | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2440 | glutamine synthetase | |||
| ??? | R | HpyCA17GmrSDP (79% identity) | Hpy18GmrSDP | |
| 2455 | 50S ribosomal protein L9 | |||