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Putative Helicobacter pylori Shi112 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 14396
Complete sequence: 1,663,456 bp
GenBank #: CP003474
REBASE acronym: Hpy112
Org_num: 8759
All begin HPSH112_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
2455 | polyphosphate kinase | |||
2465 | S | S.HpySH010ORF2440P (100% identity) | S.Hpy112ORF2470P | |
2470 | M | M.HpySH010ORF2440P (100% identity) | M.Hpy112ORF2470P | |
??? | R | HpySH010ORF2440P (99% identity) | Hpy112ORF2470P | |
2485 | 631 aa hypothetical protein | |||
3050 | cadmium-transporting ATPase | |||
3055 | S | S.HpySH007ORF2895P (98% identity) | S.Hpy112ORF3055P | |
3060 | outer membrane protein HofF | |||
7235 | 49 aa hypothetical protein | |||
7240 | S | S.HpySH010ORF7095P (100% identity) | S.Hpy112ORF7240P | |
7245 | formyltetrahydrofolate deformylase | |||
7740 | 30 aa hypothetical protein | |||
7745 | S | S.HpySH010ORF7600P (100% identity) | S.Hpy112ORF7755P | |
7750 | 251 aa hypothetical protein | |||
??? | M | M.HpySH010ORF7600P (99% identity) | M.Hpy112ORF7755P | |
7765 | R | HpySH010ORF7600P (99% identity) | Hpy112ORF7755P | |
7770 | 235 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
230 | 330 aa hypothetical protein | |||
235 | M | M1.HpySH010IV (99% identity) | CCTC | M1.Hpy112ORF235P |
240 | M | M1.Hpyfe78ORF6990P (79% identity) | CCTC | M2.Hpy112ORF235P |
245 | proline permease (putP) | |||
435 | malonyl CoA-acyl carrier protein transacylase | |||
440 | R | HpySH010IXP (100% identity) | GATC | Hpy112ORF445P |
445 | M | M.HpySH010IX (100% identity) | GATC | M.Hpy112ORF445P |
450 | alpha-1,2-fucosyltransferase | |||
1595 | exodeoxyribonuclease VII large subunit | |||
1600 | M | M.HpySH010XI (100% identity) | TCGA | M.Hpy112ORF1600P |
1605 | 204 aa hypothetical protein | |||
1605 | 204 aa hypothetical protein | |||
1610 | R | HpySH010IIIP (100% identity) | CCGG | Hpy112ORF1615P |
1615 | M | M.HpySH010III (100% identity) | CCGG | M.Hpy112ORF1615P |
1620 | ATP-dependent protease binding subunit ClpB | |||
1850 | 293 aa hypothetical protein | |||
??? | R | HpySORF1620P (99% identity) | CTNAG | Hpy112ORF1860P |
1860 | M | M.HpySH010V (100% identity) | CTNAG | M.Hpy112ORF1860P |
1865 | 118 aa hypothetical protein | |||
2030 | GTP-binding protein LepA | |||
2035 | M | M.HpySH014ORF1855P (100% identity) | GCNGC | M.Hpy112ORF2035P |
2040 | 156 aa hypothetical protein | |||
2205 | sec-independent translocase | |||
2210 | M | M.HpySH014ORF2030P (100% identity) | GDGCHC | M.Hpy112ORF2210P |
2215 | Holliday junction DNA helicase RuvB | |||
2545 | glutamyl-tRNA synthetase | |||
2560 | M | M.HpySH010II (99% identity) | ATTAAT | M.Hpy112ORF2560P |
2565 | type II adenine specific methyltransferase | |||
2570 | GTP-binding protein TypA | |||
2575 | M | M.HpySH010ORF2530P (100% identity) | ACGT | M.Hpy112ORF2575P |
2580 | catalase-like protein | |||
2740 | 225 aa hypothetical protein | |||
2745 | R | HpySORF2550P (100% identity) | GGCC | Hpy112ORF2750P |
2750 | M | M.HpySH010ORF2695P (100% identity) | GGCC | M.Hpy112ORF2750P |
2755 | type I restriction enzyme M protein | |||
3665 | 449 aa hypothetical protein | |||
3670 | RM | HpySH010ORF3570P (60% identity) | Hpy112ORF3670P | |
3675 | 633 aa hypothetical protein | |||
3670 | 981 aa hypothetical protein | |||
3675 | RM | HpySH010ORF3570P (38% identity) | Hpy112ORF3675P | |
3680 | anaerobic glycerol-3-phosphate dehydrogenase | |||
4730 | flagellar hook protein FlgE | |||
4735 | M | M.Hpy120ORF4485P (99% identity) | GTNNAC | M.Hpy112ORF4735P |
4740 | rep helicase, single-stranded DNA-dependent | |||
5550 | 144 aa hypothetical protein | |||
5555 | M | M.HpySH010ORF5445P (100% identity) | GCGC | M.Hpy112ORF5555P |
5560 | flgM protein | |||
6020 | 222 aa hypothetical protein | |||
6025 | M | M.HpySH010I (100% identity) | CATG | M.Hpy112ORF6025P |
6030 | 47 aa hypothetical protein | |||
6775 | adenine specific DNA methyltransferase | |||
6780 | R | HpySH010VIIIP (100% identity) | GANTC | Hpy112ORF6775P |
6785 | M | M.HpySH014VIII (100% identity) | GANTC | M.Hpy112ORF6775P |
??? | adenine specific DNA methyltransferase | |||
6785 | adenine specific DNA methyltransferase | |||
??? | RM | Hpy464ORF6560P (97% identity) | Hpy112ORF6790P | |
6795 | nicotinate-nucleotide pyrophosphorylase | |||
6845 | transcriptional regulator | |||
6850 | R | HpySH010VIP (100% identity) | GAAGA | Hpy112ORF6855P |
6855 | M | M1.HpySH010VI (100% identity) | GAAGA | M1.Hpy112ORF6855P |
6860 | M | M2.HpySH010VI (100% identity) | GAAGA | M2.Hpy112ORF6855P |
6865 | adenine-specific DNA methylase | |||
7155 | lipopolysaccharide 1,2-glucosyltransferase | |||
7160 | M | M.HpySH010VII (100% identity) | GAATTC | M.Hpy112ORF7160P |
7165 | R | HpyTW03VIIP (99% identity) | GAATTC | Hpy112ORF7160P |
7170 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
7445 | DNA polymerase I | |||
7450 | S | S.HpySH010ORF7310P (97% identity) | S.Hpy112ORF7455P | |
7455 | RM | HpySH010ORF7310P (100% identity) | Hpy112ORF7455P | |
7460 | 191 aa hypothetical protein | |||
7665 | transcription elongation factor NusA | |||
7670 | RM | HpySH010ORF7520P (100% identity) | Hpy112ORF7670P | |
7675 | type III restriction enzyme | |||
7865 | 67 aa hypothetical protein | |||
7870 | M | M.HpySH011XI (100% identity) | TGCA | M.Hpy112ORF7870P |
7875 | R | HpySH010XIIP (100% identity) | TGCA | Hpy112ORF7870P |
7880 | R4 protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
6860 | type IIS restriction enzyme M2 protein (mod) | |||
??? | M | M.HpySH010ORF6725P (100% identity) | M.Hpy112ORF6865P | |
6875 | R | HpySH010ORF6725P (100% identity) | Hpy112ORF6865P | |
6880 | rod shape-determining protein MreC | |||
6930 | endonuclease | |||
6935 | M | type III restriction enzyme M protein | M.Hpy112ORF6935P | |
6940 | biotin synthase | |||
7670 | type IIS restriction-modification | |||
7675 | R | HpySH010ORF7530P (100% identity) | Hpy112ORF7680P | |
??? | M | M.HpyPU001ORF7350P (97% identity) | M.Hpy112ORF7680P | |
7690 | ATP-dependent DNA helicase RecG |