Helicobacter pylori Shi417 |
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Putative Helicobacter pylori Shi417 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 14396
Complete sequence: 1,665,719 bp
GenBank #: CP003472
REBASE acronym: Hpy417
Org_num: 8755
All begin HPSH417_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2190 | 36 aa hypothetical protein | |||
| 2195 | S | S.HpyR03ORF2190P (98% identity) | S.Hpy417ORF2200P | |
| 2200 | M | M.HpyAs004ORF2240P (99% identity) | M.Hpy417ORF2200P | |
| ??? | R | HpySH014ORF2290P (98% identity) | Hpy417ORF2200P | |
| 2215 | 631 aa hypothetical protein | |||
| 3815 | outer membrane protein HofF | |||
| 3820 | S | S.Hpy117ORF3765P (98% identity) | S.Hpy417ORF3820P | |
| 3825 | cadmium-transporting ATPase | |||
| 4105 | N-acetylneuraminic acid synthetase | |||
| 4110 | R | HpySH014XIIIP (74% identity) | Hpy417ORF4140P | |
| 4125 | thiamine-phosphate pyrophosphorylase | |||
| 7465 | 30 aa hypothetical protein | |||
| 7470 | S | S.HpyPE121VI (98% identity) | S.Hpy417ORF7480P | |
| 7475 | 258 aa hypothetical protein | |||
| 7480 | M | M.Hpy169ORF7565P (99% identity) | M.Hpy417ORF7480P | |
| 7485 | R | HpySH014VIP (35% identity) | Hpy417ORF7480P | |
| 7490 | relaxase | |||
| 7655 | 262 aa hypothetical protein | |||
| 7660 | R | HpySORF7890P (62% identity) | Hpy417ORF7660P | |
| 7665 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 215 | 330 aa hypothetical protein | |||
| 220 | M | M1.Hpy20ORF220P (100% identity) | CCTC | M1.Hpy417ORF220P |
| 225 | M | M2.HpyLIM2VP (99% identity) | CCTC | M2.Hpy417ORF220P |
| 230 | R | Hpy169ORF230P (93% identity) | CCTC | Hpy417ORF220P |
| 235 | adenine/cytosine DNA methyltransferase | |||
| 430 | malonyl CoA-acyl carrier protein transacylase | |||
| 435 | R | HpyAs010VIP (97% identity) | GATC | Hpy417ORF440P |
| 440 | M | M.HpyMA15XII (99% identity) | GATC | M.Hpy417ORF440P |
| 455 | 176 aa hypothetical protein | |||
| 1305 | exodeoxyribonuclease VII large subunit | |||
| 1310 | M | M.HpySORF1350P (99% identity) | TCGA | M.Hpy417ORF1310P |
| 1315 | 204 aa hypothetical protein | |||
| 1315 | 204 aa hypothetical protein | |||
| ??? | R | HpySH007ORF1420P (79% identity) | CCGG | Hpy417ORF1330P |
| 1330 | M | M.Hpy169ORF1500P (99% identity) | CCGG | M.Hpy417ORF1330P |
| 1335 | ATP-dependent protease binding subunit ClpB | |||
| 1765 | GTP-binding protein LepA | |||
| 1770 | M | M.Hpyoh1ORF4535P (100% identity) | GCNGC | M.Hpy417ORF1770P |
| 1775 | 156 aa hypothetical protein | |||
| 2275 | outer membrane protein | |||
| 2280 | M | M.Hpy169ORF2470P (98% identity) | ATTAAT | M.Hpy417ORF2280P |
| 2285 | type II adenine specific methyltransferase | |||
| 2290 | GTP-binding protein TypA | |||
| 2295 | M | M.HpyHK721ORFXP (100% identity) | ACNGT | M.Hpy417ORF2295P |
| 2300 | R | HpySORF2365P (99% identity) | ACNGT | Hpy417ORF2295P |
| 2305 | type II DNA modification methyltransferase | |||
| 2300 | type II restriction endonuclease | |||
| 2305 | M | M.Hpy169ORF2495P (99% identity) | ACGT | M.Hpy417ORF2305P |
| 2310 | R | HpyTW16ORF2340P (98% identity) | ACGT | Hpy417ORF2305P |
| 2315 | catalase-like protein | |||
| 3225 | anaerobic glycerol-3-phosphate dehydrogenase | |||
| 3230 | RM | HpySH011ORF3450P (96% identity) | Hpy417ORF3230P | |
| 3235 | outer membrane protein HorF | |||
| 4140 | type I restriction enzyme M protein | |||
| 4145 | M | M.HpySORF2550P (100% identity) | GGCC | M.Hpy417ORF4145P |
| 4150 | R | HpySH014ORF4180P (100% identity) | GGCC | Hpy417ORF4145P |
| 4155 | 225 aa hypothetical protein | |||
| 4405 | flagellar hook protein FlgE | |||
| 4410 | R | HpyU003XIP (99% identity) | GTNNAC | Hpy417ORF4415P |
| 4415 | M | M.HpyCA20VIII (99% identity) | GTNNAC | M.Hpy417ORF4415P |
| 4420 | rep helicase, single-stranded DNA-dependent | |||
| 5310 | 144 aa hypothetical protein | |||
| ??? | M | M.Hpy20ORF5685P (100% identity) | GCGC | M.Hpy417ORF5315P |
| 5320 | flgM protein | |||
| 5925 | 222 aa hypothetical protein | |||
| 5930 | M | M.HpySH014I (100% identity) | CATG | M.Hpy417ORF5930P |
| 5935 | R | HpySH014IP (92% identity) | CATG | Hpy417ORF5930P |
| 5940 | serine acetyltransferase | |||
| 6635 | protease | |||
| 6640 | R | HpySH007ORF6510P (97% identity) | GANTC | Hpy417ORF6645P |
| 6645 | M | M.HpySH014VIII (99% identity) | GANTC | M.Hpy417ORF6645P |
| 6650 | hypothetical protein | |||
| 6645 | adenine specific DNA methyltransferase | |||
| ??? | RM | HpySH014ORF6515P (96% identity) | Hpy417ORF6650P | |
| 6660 | nicotinate-nucleotide pyrophosphorylase | |||
| 6710 | transcriptional regulator | |||
| ??? | R | R1.Hpy225ORF1404P (97% identity) | GAAGA | Hpy417ORF6725P |
| 6725 | M | M1.HpySH010VI (99% identity) | GAAGA | M1.Hpy417ORF6725P |
| 6730 | M | M.HpyPE11III (100% identity) | GAAGA | M2.Hpy417ORF6725P |
| 6735 | adenine-specific DNA methylase | |||
| 7160 | DNA polymerase I | |||
| 7165 | S | S.Hpy20ORF7420P (45% identity) | S.Hpy417ORF7170P | |
| ??? | RM | Hpy86ORF580P (97% identity) | Hpy417ORF7170P | |
| 7180 | 191 aa hypothetical protein | |||
| 7390 | transcription elongation factor NusA | |||
| 7395 | RM | Hpy1768ORFCP (80% identity) | Hpy417ORF7395P | |
| 7400 | type III restriction enzyme | |||
| 7755 | 67 aa hypothetical protein | |||
| 7760 | M | M.HpySH014XII (100% identity) | TGCA | M.Hpy417ORF7760P |
| 7765 | R | HpyAs006XIP (100% identity) | TGCA | Hpy417ORF7760P |
| 7770 | 48 aa hypothetical protein | |||
| 7770 | 48 aa hypothetical protein | |||
| 7775 | M | M.Hpy20ORF7850P (99% identity) | M.Hpy417ORF7775P | |
| 7790 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6730 | type IIS restriction enzyme M2 protein (mod) | |||
| 6735 | M | M.HpyAs009ORF6665P (98% identity) | M.Hpy417ORF6735P | |
| 6740 | R | Hpy20ORF6995P (98% identity) | Hpy417ORF6735P | |
| 6745 | rod shape-determining protein MreC | |||
| 6795 | endonuclease | |||
| 6800 | M | M.HpyAs010ORF6855P (98% identity) | M.Hpy417ORF6800P | |
| 6805 | R | HpyAs010ORF6855P (91% identity) | Hpy417ORF6800P | |
| 6810 | biotin synthase | |||
| 7395 | type IIS restriction-modification protein | |||
| 7400 | R | HpyAs005ORF7350P (98% identity) | Hpy417ORF7405P | |
| 7405 | M | type III DNA modification methyltransferase | M.Hpy417ORF7405P | |
| 7410 | ATP-dependent DNA helicase RecG | |||