Helicobacter pylori Shi169 |
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Putative Helicobacter pylori Shi169 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 14396
Complete sequence: 1,616,909 bp
GenBank #: CP003473
REBASE acronym: Hpy169
Org_num: 8756
All begin HPSH169_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2375 | polyphosphate kinase | |||
| 2380 | S | S.HpySH010ORF2440P (99% identity) | S.Hpy169ORF2385P | |
| 2385 | M | M.HpySH014ORF2290P (99% identity) | M.Hpy169ORF2385P | |
| ??? | R | HpyAs009VP (96% identity) | Hpy169ORF2385P | |
| 2400 | 631 aa hypothetical protein | |||
| 4040 | outer membrane protein HofF | |||
| 4045 | S | S.HpySH010ORF2990P (98% identity) | S.Hpy169ORF4045P | |
| 4050 | cadmium-transporting ATPase | |||
| 4335 | N-acetylneuraminic acid synthetase | |||
| 4340 | R | HpySH011XIIP (98% identity) | Hpy169ORF4350P | |
| 4345 | S | S.HpyGE4ORF4085P (93% identity) | S.Hpy169ORF4350P | |
| 4350 | M | M.HpySH007ORF2590P (100% identity) | M.Hpy169ORF4350P | |
| 4355 | site-specific DNA methyltransferase | |||
| 7020 | 30 aa hypothetical protein | |||
| 7025 | S | S.Hpy117ORF7375P (91% identity) | S.Hpy169ORF7025P | |
| 7030 | formyltetrahydrofolate deformylase | |||
| 7550 | 30 aa hypothetical protein | |||
| 7555 | S | S.HpyAs002ORF7555P (99% identity) | S.Hpy169ORF7565P | |
| 7560 | 251 aa hypothetical protein | |||
| 7565 | M | M.Hpy417ORF7480P (99% identity) | M.Hpy169ORF7565P | |
| 7570 | R | HpyAs002ORF7555P (57% identity) | Hpy169ORF7565P | |
| 7575 | transposase | |||
| 7580 | transposase A-OrfA | |||
| 7585 | R | Hpy20ORFBP (39% identity) | Hpy169ORF7585P | |
| 7590 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 225 | 330 aa hypothetical protein | |||
| 230 | M | M1.HpySORF245P (100% identity) | CCTC | M1.Hpy169ORF230P |
| 235 | M | M2.HpySH007VP (99% identity) | CCTC | M2.Hpy169ORF230P |
| ??? | R | Hpy154ORF305P (96% identity) | CCTC | Hpy169ORF230P |
| 250 | type II DNA modification enzyme | |||
| ??? | restriction endonuclease | |||
| 250 | M | M.Hpy20ORF240P (100% identity) | GTSAC | M.Hpy169ORF250P |
| 255 | R | type II restriction enzyme | GTSAC | Hpy169ORF250P |
| 260 | type II DNA modification enzyme | |||
| 430 | malonyl CoA-acyl carrier protein transacylase | |||
| 435 | R | HpySH014IXP (99% identity) | GATC | Hpy169ORF440P |
| 440 | M | M.HpySORF465P (99% identity) | GATC | M.Hpy169ORF440P |
| 455 | 176 aa hypothetical protein | |||
| 1470 | exodeoxyribonuclease VII large subunit | |||
| 1475 | M | M.HpySORF1350P (100% identity) | TCGA | M.Hpy169ORF1475P |
| 1480 | 204 aa hypothetical protein | |||
| 1490 | transposase A-OrfA | |||
| 1495 | R | HpySH007IVP (99% identity) | CCGG | Hpy169ORF1500P |
| 1500 | M | M.HpySH007IV (99% identity) | CCGG | M.Hpy169ORF1500P |
| 1505 | ATP-dependent protease binding subunit ClpB | |||
| 1735 | 293 aa hypothetical protein | |||
| 1740 | R | HpySORF1620P (91% identity) | CTNAG | Hpy169ORF1745P |
| 1745 | M | M.Hpyfe124ORF5400P (99% identity) | CTNAG | M.Hpy169ORF1745P |
| 1750 | 125 aa hypothetical protein | |||
| 1945 | GTP-binding protein LepA | |||
| 1950 | M | M.HpySH014ORF1855P (100% identity) | GCNGC | M.Hpy169ORF1950P |
| 1955 | 156 aa hypothetical protein | |||
| 2465 | outer membrane protein | |||
| 2470 | M | M.Hpy417ORF2280P (98% identity) | ATTAAT | M.Hpy169ORF2470P |
| 2475 | type II adenine specific methyltransferase | |||
| 2480 | GTP-binding protein TypA | |||
| 2485 | M | M.HpySH014II (99% identity) | ACNGT | M.Hpy169ORF2485P |
| 2490 | R | HpySORF2365P (100% identity) | ACNGT | Hpy169ORF2485P |
| 2495 | type II DNA modification methyltransferase | |||
| 2490 | type II restriction endonuclease | |||
| 2495 | M | M.HpySH014ORF2410P (99% identity) | ACGT | M.Hpy169ORF2495P |
| 2500 | R | HpySH014ORF2410P (97% identity) | ACGT | Hpy169ORF2495P |
| 2505 | catalase-like protein | |||
| 3415 | anaerobic glycerol-3-phosphate dehydrogenase | |||
| 3420 | RM | 340 aa hypothetical protein | Hpy169ORF3420AP | |
| ??? | RM | helicase | Hpy169ORF3420BP | |
| ??? | RM | 554 aa hypothetical protein | Hpy169ORF3420CP | |
| 3435 | 450 aa hypothetical protein | |||
| 3530 | 48 aa hypothetical protein | |||
| 3535 | M | M.HpySORF3420P (99% identity) | CCNNGG | M.Hpy169ORF3535P |
| 3540 | R | Hpyfe65ORF3785P (100% identity) | CCNNGG | Hpy169ORF3535P |
| 3545 | 133 aa hypothetical protein | |||
| 4350 | type I restriction enzyme M protein | |||
| 4355 | M | M.HpySORF2550P (100% identity) | GGCC | M.Hpy169ORF4355P |
| 4360 | R | HpySH014ORF4180P (100% identity) | GGCC | Hpy169ORF4355P |
| 4365 | 225 aa hypothetical protein | |||
| 4605 | flagellar hook protein FlgE | |||
| 4610 | R | restriction endonuclease | GTNNAC | Hpy169ORF4615P |
| 4615 | M | M.HpyK033ORF4600P (90% identity) | GTNNAC | M.Hpy169ORF4615P |
| 4620 | rep helicase, single-stranded DNA-dependent | |||
| 5535 | 144 aa hypothetical protein | |||
| 5540 | M | M.HpySH014ORF5365P (100% identity) | GCGC | M.Hpy169ORF5540P |
| 5545 | flgM protein | |||
| 6005 | 222 aa hypothetical protein | |||
| 6010 | M | M.HpyAs005I (99% identity) | CATG | M.Hpy169ORF6010P |
| 6015 | 47 aa hypothetical protein | |||
| 6715 | adenine specific DNA methyltransferase | |||
| 6720 | RM | HpySH014VIIIP (99% identity) | GANTC | Hpy169ORF6715P |
| 6725 | M | M.HpySH014VIII (100% identity) | GANTC | M.Hpy169ORF6715P |
| ??? | adenine specific DNA methyltransferase | |||
| 6725 | adenine specific DNA methyltransferase | |||
| ??? | RM | HpyPU007ORF6470P (90% identity) | Hpy169ORF6730P | |
| 6740 | nicotinate-nucleotide pyrophosphorylase | |||
| 6790 | transcriptional regulator | |||
| 6795 | R | HpySH010VIP (70% identity) | GAAGA | Hpy169ORF6795P |
| 6800 | type II restriction endonuclease | |||
| 6795 | type IIS restriction enzyme R protein | |||
| 6800 | R | HpySH014ORF6590P (100% identity) | GATATC | Hpy169ORF6805P |
| 6805 | M | M.HpySH014ORF6590P (100% identity) | GATATC | M.Hpy169ORF6805P |
| 6810 | adenine-specific DNA methylase | |||
| 7235 | DNA polymerase I | |||
| ??? | S | S.HpySORF7540P (100% identity) | S1.Hpy169ORF7250P | |
| 7245 | S | S1.HpyC105ORF575P (96% identity) | S2.Hpy169ORF7250P | |
| 7250 | RM | HpyAs002XIII (98% identity) | Hpy169ORF7250P | |
| 7255 | 191 aa hypothetical protein | |||
| 7470 | 65 aa hypothetical protein | |||
| ??? | RM | HpySH014ORF7230P (65% identity) | Hpy169ORFAP | |
| 7480 | type III restriction enzyme | |||
| 7680 | 67 aa hypothetical protein | |||
| 7685 | M | M.HpySH014XII (100% identity) | TGCA | M.Hpy169ORF7685P |
| 7690 | R | HpyAs006XIP (100% identity) | TGCA | Hpy169ORF7685P |
| 7695 | 148 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6805 | DNA adenine methylase | |||
| ??? | M | M.HpySH014ORF6595P (99% identity) | M.Hpy169ORF6810P | |
| 6820 | R | Hpy464ORF6635P (99% identity) | Hpy169ORF6810P | |
| 6825 | rod shape-determining protein MreC | |||
| 6875 | endonuclease | |||
| 6880 | M | M.HpyAs006ORF6625P (98% identity) | M.Hpy169ORF6880P | |
| ??? | R | HpySH014ORF6660P (25% identity) | Hpy169ORF6880P | |
| 6895 | type III restriction enzyme R protein | |||
| ??? | type II restriction endonuclease | |||
| 7480 | R | HpySH007ORF7230P (98% identity) | Hpy169ORF7485P | |
| ??? | M | M.HpyPE104ORF7535P (96% identity) | M.Hpy169ORF7485P | |
| 7495 | ATP-dependent DNA helicase RecG | |||