Helicobacter cetorum MIT 99-5656 |
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Putative Helicobacter cetorum MIT 99-5656 RM systems
Ref: Kersulyte,D. and Berg,D.E. unpublished
REBASE ref # 14430
Complete sequence: 1,833,666 bp
GenBank #: CP003481
REBASE acronym: Hce99
Org_num: 8769
All begin HCD_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2100 | 298 aa hypothetical protein | |||
| 2105 | S | S.Hce7128ORF4560P (97% identity) | S.Hce99ORF2110P | |
| 2110 | M | type I restriction-modification system, M | M.Hce99ORF2110P | |
| 2115 | Holliday junction resolvase-like protein | |||
| 4125 | copper efflux system membrane protein CusA | |||
| 4130 | M | M.HpySP610ORF7450P (80% identity) | M.Hce99ORF4130P | |
| 4135 | 87 aa hypothetical protein | |||
| 4140 | RelB protein | |||
| 4145 | S | S.HpyME23ORF6815P (85% identity) | S.Hce99ORF4130P | |
| 4150 | R | type I restriction enzyme restriction subunit | Hce99ORF4130P | |
| 4155 | 235 aa hypothetical protein | |||
| 4170 | 467 aa hypothetical protein | |||
| 4175 | S | S.Hpy355ORF3610P (53% identity) | S.Hce99ORF4175P | |
| 4180 | replicative DNA helicase | |||
| 4775 | NADP-dependent malic enzyme (NADP-me) | |||
| 4780 | R | Bvi15602ORF15600P (16% identity) | Hce99ORF4790P | |
| 4785 | S | S.Coc28121ORF6210P (21% identity) | S.Hce99ORF4790P | |
| 4790 | M | N-6 DNA methylase | M.Hce99ORF4790P | |
| 4795 | prephenate dehydrogenase | |||
| 7760 | L-serine deaminase | |||
| 7765 | M | M.Tsp855ORF11435P (28% identity) | M.Hce99ORF7765P | |
| 7770 | IS606 transposase | |||
| 7775 | IS200 insertion sequence from SARA17 | |||
| 7780 | M | S.Cta1kORF2785P (18% identity) | M.Hce99ORF7780P | |
| 7785 | 67 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 525 | 366 aa hypothetical protein | |||
| ??? | M | M.Hpy199ORFEP (90% identity) | M.Hce99ORF530P | |
| 540 | anthranilate synthase component I | |||
| 670 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 675 | M | M.HpyPO106VIII (93% identity) | GAATTC | M.Hce99ORF675P |
| 680 | R | HpyU416VIP (97% identity) | GAATTC | Hce99ORF675P |
| 685 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 1150 | 227 aa hypothetical protein | |||
| 1155 | RM | Hce7128ORF7495P (90% identity) | Hce99ORF1155P | |
| 1160 | 135 aa hypothetical protein | |||
| 1510 | outer membrane protein 8 | |||
| 1515 | R | HpyIS4VIIIP (50% identity) | GTAC | Hce99ORF1520P |
| 1520 | M | M.HpyMM01XII (84% identity) | GTAC | M.Hce99ORF1520P |
| 1525 | DNA gyrase subunit B | |||
| 1905 | 336 aa hypothetical protein | |||
| 1910 | M | M.Hce7128ORF1440P (48% identity) | M1.Hce99ORF1910P | |
| 1915 | M | M.Hce7128ORF1440P (41% identity) | M2.Hce99ORF1910P | |
| 1920 | R | Hce7128ORF1440P (62% identity) | Hce99ORF1910P | |
| 1925 | adenine specific DNA methyltransferase | |||
| 1920 | AlwI restriction endonuclease family protein | |||
| 1925 | M | M.Hce7128ORF7450P (95% identity) | GTNNAC | M.Hce99ORF1925P |
| 1930 | ATP-dependent DNA helicase | |||
| 1930 | ATP-dependent DNA helicase | |||
| ??? | R | HpyH012ORF4060P (87% identity) | GGCC | Hce99ORF1950P |
| 1950 | M | DNA (cytosine-5-)-methyltransferase | GGCC | M.Hce99ORF1950BP |
| 1955 | IS606 transposase | |||
| 1960 | IS200 insertion sequence from SARA17 | |||
| 1965 | M | site-specific DNA methyltransferase | GGCC | M.Hce99ORF1950AP |
| 1970 | integral membrane protein | |||
| 2050 | 151 aa hypothetical protein | |||
| 2055 | M | M.HpyNP12ORF1885P (89% identity) | GCNGC | M.Hce99ORF2055P |
| 2060 | GTP-binding protein LepA | |||
| 2395 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 2400 | M | M.Hce7128ORF4940P (96% identity) | CCGG | M.Hce99ORF2400P |
| 2405 | R | Hce7128ORF4940P (82% identity) | CCGG | Hce99ORF2400P |
| 2410 | IS606 transposase | |||
| 2740 | 498 aa hypothetical protein | |||
| 2745 | M | M.Hce7128ORF6445P (71% identity) | M.Hce99ORF2745P | |
| 2750 | purine-nucleoside phosphorylase | |||
| 3635 | Symporter, SSS family (Proline Permease), | |||
| 3640 | M | M.Hpy94ORF275P (86% identity) | CCTTC | M.Hce99ORF3640P |
| 3645 | 27 aa hypothetical protein | |||
| 3650 | R | HpyU203VP (72% identity) | CCTTC | Hce99ORF3640P |
| 3655 | 4-hydroxythreonine-4-phosphate dehydrogenase | |||
| 3905 | 45 aa hypothetical protein | |||
| ??? | R | HpyGCT56ORFNP (90% identity) | GATATC | Hce99ORF3920P |
| 3920 | M | M.Hpy030XIII (79% identity) | GATATC | M.Hce99ORF3920P |
| 3925 | site-specific DNA-methyltransferase | |||
| 3920 | DNA adenine methylase | |||
| 3925 | M | site-specific DNA-methyltransferase | M.Hce99ORF3925P | |
| 3930 | 208 aa hypothetical protein | |||
| 3930 | 208 aa hypothetical protein | |||
| 3935 | M | M.Hce7128ORF600P (97% identity) | CATG | M.Hce99ORF3935P |
| 3940 | 50S ribosomal protein L17 | |||
| 4225 | 79 aa hypothetical protein | |||
| 4230 | M | M.HpyLI20VI (90% identity) | GANTC | M.Hce99ORF4225P |
| 4235 | R | HpyPO09VIP (64% identity) | GANTC | Hce99ORF4225P |
| 4240 | 165 aa hypothetical protein | |||
| 4285 | cagY like protein | |||
| ??? | S | S.HpySW32ORF7285P (46% identity) | S.Hce99ORF4290P | |
| 4300 | RM | HpySW32ORF7285P (82% identity) | Hce99ORF4290P | |
| 4305 | 191 aa hypothetical protein | |||
| 4445 | 581 aa hypothetical protein | |||
| 4450 | M | M.HpySP706ORF1905P (94% identity) | M.Hce99ORF4450P | |
| ??? | R | Hce7128ORF3445P (62% identity) | Hce99ORF4450P | |
| 4465 | outer membrane protein HopK | |||
| 4535 | transcription elongation factor NusA | |||
| 4540 | M | M2.Hpyfe48ORF7120P (83% identity) | GAAGA | M1.Hce99ORF4540P |
| ??? | M | type II restriction endonuclease subunit M | GAAGA | M2.Hce99ORF4540P |
| ??? | R | HpyB140ORF7480P (46% identity) | GAAGA | Hce99ORF4540P |
| 4565 | type III restriction enzyme | |||
| 4675 | branched-chain amino acid aminotransferase | |||
| ??? | R | Hpyfe75ORF7750P (79% identity) | TGCA | Hce99ORF4690P |
| 4690 | M | M.HpyZ008X (84% identity) | TGCA | M.Hce99ORF4690P |
| 4695 | 67 aa hypothetical protein | |||
| 4835 | rod shape-determining protein MreC | |||
| ??? | RM | Hpy9310ORFPP (39% identity) | Hce99ORFAP | |
| 4850 | 115 aa hypothetical protein | |||
| 5160 | IS200 insertion sequence from SARA17 | |||
| 5165 | R | HpySW28ORF3260P (56% identity) | GGNNCC | Hce99ORF5170P |
| 5170 | M | M.HpyU416ORF3405P (88% identity) | GGNNCC | M.Hce99ORF5170P |
| 5175 | 267 aa hypothetical protein | |||
| 5495 | dihydrodipicolinate reductase | |||
| ??? | R | Hce99ORF6290P (91% identity) | Hce99ORF5510P | |
| 5510 | M | M.Hce99ORF6290P (57% identity) | M.Hce99ORF5510P | |
| 5515 | FAD linked oxidase-like protein | |||
| 5950 | 287 aa hypothetical protein | |||
| 5955 | M | M.HpyI026II (82% identity) | ATTAAT | M.Hce99ORF5955P |
| 5960 | outer membrane protein (omp22) | |||
| 6270 | 285 aa hypothetical protein | |||
| ??? | R | Hce99ORF5510P (91% identity) | Hce99ORF6290P | |
| 6290 | M | M.Hce99ORF5510P (57% identity) | M.Hce99ORF6290P | |
| 6295 | sec-independent translocase | |||
| 6630 | flagellar hook protein FlgE | |||
| ??? | M | M.HheASB1ORF11910P (46% identity) | M.Hce99ORF6650P | |
| 6660 | iron(III) dicitrate transporter, ATP-binding | |||
| 7280 | 144 aa hypothetical protein | |||
| 7285 | R | HpyC018XVP (92% identity) | GCGC | Hce99ORF7290P |
| 7290 | M | M.Hpyfe21ORF6045P (85% identity) | GCGC | M.Hce99ORF7290P |
| 7295 | FlgM protein | |||
| 7400 | 429 aa hypothetical protein | |||
| 7405 | M | M.Hce7128ORF8615P (94% identity) | TCNNGA | M.Hce99ORF7405P |
| 7410 | R | Hce7128ORF8615P (98% identity) | TCNNGA | Hce99ORF7405P |
| 7415 | excinuclease ABC subunit B | |||
| 7465 | IS200 insertion sequence from SARA17 | |||
| 7470 | M | M.HpyC105ORF4335P (93% identity) | GCSGC | M.Hce99ORF7470P |
| 7475 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate | |||
| 8460 | glucokinase | |||
| 8465 | M | M.HpyCRI4ORF2240P (88% identity) | ACGT | M.Hce99ORF8465P |
| 8470 | R | Hpy26A1ORF2275P (82% identity) | ACGT | Hce99ORF8465P |
| 8475 | tetracycline resistance protein tetA(P) | |||
| 8540 | protein-export membrane protein SecD | |||
| 8545 | R | HpySA7ORF5765P (86% identity) | TCNGA | Hce99ORF8550P |
| 8550 | M | M.HpySP501XIII (88% identity) | TCNGA | M.Hce99ORF8550P |
| 8555 | hydrogenase expression/formation protein | |||
| 8565 | 330 aa hypothetical protein | |||
| 8570 | M | M1.HpyF019IX (87% identity) | CCTC | M1.Hce99ORF8570P |
| 8575 | M | M2.Hce7128ORF2255P (88% identity) | CCTC | M2.Hce99ORF8570P |
| ??? | R | Hce7128ORF2255P (74% identity) | CCTC | Hce99ORF8570P |
| 8590 | UGMP family protein | |||
| 8590 | UGMP family protein | |||
| 8595 | M | M.Hce7128ORF1270P (86% identity) | GATC | M.Hce99ORF8595P |
| 8600 | 183 aa hypothetical protein | |||
| 8615 | 337 aa hypothetical protein | |||
| ??? | M | M1.HpyBR10ORF7245P (86% identity) | M1.Hce99ORF8620P | |
| 8630 | M | M2.HpyCO9ORF6910P (86% identity) | M2.Hce99ORF8620P | |
| 8635 | R | HpyNCI16ORFUP (66% identity) | Hce99ORF8620P | |
| 8640 | 247 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | DNA -methyltransferase | |||
| 4565 | R | type III restriction enzyme | Hce99ORF4570P | |
| 4570 | M | M.HpySA50ORF184P (57% identity) | M.Hce99ORF4570P | |
| 4575 | ATP-dependent DNA helicase RecG | |||
| 4650 | 161 aa hypothetical protein | |||
| 4655 | M | M.Fsp77ORF18320P (59% identity) | M.Hce99ORF4655P | |
| 4660 | R | Nsp33080ORFBP (61% identity) | Hce99ORF4655P | |
| 4665 | DNA polymerase I | |||