Helicobacter pylori HUP-B14 |
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Putative Helicobacter pylori HUP-B14 RM systems
Ref: Kersulyte,D. and Berg,D.E. unpublished
REBASE ref # 14430
Complete sequence: 1,599,280 bp
GenBank #: CP003486
REBASE acronym: HpyB14
Org_num: 8770
All begin HPB14_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2130 | polyphosphate kinase | |||
| 2135 | S | S.HpyC22ORF2130P (97% identity) | S.HpyB14ORF2140P | |
| 2140 | M | M.HpyAR3ORF2125P (96% identity) | M.HpyB14ORF2140P | |
| ??? | R | HpyPE117ORF2175P (93% identity) | HpyB14ORF2140P | |
| 2155 | 631 aa hypothetical protein | |||
| 2420 | 227 aa hypothetical protein | |||
| 2425 | M | M.HpyPR05ORF4025P (96% identity) | M.HpyB14ORF2425P | |
| 2430 | S | S.HpyCOL202ORF2620P (96% identity) | S.HpyB14ORF2425P | |
| 2435 | R | HpySP702XIVP (95% identity) | HpyB14ORF2425P | |
| 2440 | hydroxyethylthiazole kinase | |||
| 6865 | cagY like protein | |||
| 6870 | S | S.HpyPE104ORF7600P (97% identity) | S.HpyB14ORF6870P | |
| 6875 | formyltetrahydrofolate deformylase | |||
| 7375 | 30 aa hypothetical protein | |||
| 7380 | S | S.HpySP508IV (78% identity) | S.HpyB14ORF7385P | |
| ??? | M | M.HpySP802ORF7465P (96% identity) | M.HpyB14ORF7385P | |
| 7395 | R | Hpy1198ORF1010P (95% identity) | HpyB14ORF7385P | |
| 7400 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 235 | 330 aa hypothetical protein | |||
| 240 | M | M1.HpyNCI22VI (97% identity) | M.HpyB14ORF240P | |
| 245 | cytosine specific DNA methyltransferase | |||
| 240 | adenine-specific DNA methyltransferase | |||
| 245 | M | M2.HpyPE17VII (52% identity) | M.HpyB14ORF245P | |
| 250 | Symporter, SSS family (Proline Permease), | |||
| 440 | malonyl CoA-acyl carrier protein transacylase | |||
| 445 | R | HpyG019VIIIP (97% identity) | GATC | HpyB14ORF450P |
| 450 | M | M.HpySP303V (96% identity) | GATC | M.HpyB14ORF450P |
| 465 | 176 aa hypothetical protein | |||
| 1280 | exodeoxyribonuclease VII large subunit | |||
| 1285 | M | M.HpySW33X (98% identity) | TCGA | M.HpyB14ORF1285P |
| 1290 | 204 aa hypothetical protein | |||
| 1290 | 204 aa hypothetical protein | |||
| 1295 | R | HpyPE104IVP (99% identity) | CCGG | HpyB14ORF1300P |
| 1300 | M | M.HpySP405ORF1300P (98% identity) | CCGG | M.HpyB14ORF1300P |
| 1305 | ATP-dependent protease binding subunit / | |||
| 2215 | 368 aa hypothetical protein | |||
| 2220 | M | M.HpySP804II (97% identity) | ATTAAT | M.HpyB14ORF2220P |
| 2225 | type II adenine specific methyltransferase | |||
| 2230 | GTP-binding protein TypA | |||
| 2235 | M | M.HpyCA4II (99% identity) | ACNGT | M.HpyB14ORF2235P |
| 2240 | R | HpyCO1IIP (99% identity) | ACNGT | HpyB14ORF2235P |
| 2245 | type II DNA modification (methyltransferase) | |||
| 2240 | type II restriction endonuclease | |||
| 2245 | M | M.HpySP402ORF2440P (98% identity) | ACGT | M.HpyB14ORF2245P |
| ??? | R | HpyH390rORF4770P (89% identity) | ACGT | HpyB14ORF2245P |
| 2260 | catalase-like protein | |||
| 2715 | Cadmium, zinc and cobalt-transporting ATPase | |||
| 2720 | M | M.HpySP703ORF2760P (99% identity) | GCSGC | M.HpyB14ORF2720P |
| 2725 | R | HpySP703ORF2760P (100% identity) | GCSGC | HpyB14ORF2720P |
| 2730 | outer membrane protein HofF | |||
| 3330 | 270 aa hypothetical protein | |||
| 3335 | RM | HpyISR1ORF3145P (89% identity) | HpyB14ORF3335P | |
| 3340 | anaerobic glycerol-3-phosphate dehydrogenase | |||
| 4190 | 406 aa hypothetical protein | |||
| 4195 | R | HpyC018IIIP (96% identity) | GTAC | HpyB14ORF4200P |
| 4200 | M | M.HpyPE108VIII (98% identity) | GTAC | M.HpyB14ORF4200P |
| 4205 | DNA gyrase subunit B | |||
| 4420 | flagellar hook protein FlgE | |||
| 4425 | R | HpyPE14XVP (97% identity) | GTNNAC | HpyB14ORF4430P |
| 4430 | M | M.HpyU302IX (98% identity) | GTNNAC | M.HpyB14ORF4430P |
| 4435 | Rep helicase | |||
| 5060 | biotin carboxylase | |||
| 5065 | M | M.HpySP308IX (99% identity) | TCNNGA | M.HpyB14ORF5065P |
| ??? | R | HpyNCI53ORFWP (96% identity) | TCNNGA | HpyB14ORF5065P |
| 5080 | 199 aa hypothetical protein | |||
| 5275 | 144 aa hypothetical protein | |||
| 5280 | M | M.HpyCOL105XI (97% identity) | GCGC | M.HpyB14ORF5280P |
| 5285 | Anti-sigma 28 factor | |||
| 5725 | 222 aa hypothetical protein | |||
| 5730 | M | M.HpyC22I (97% identity) | CATG | M.HpyB14ORF5730P |
| 5735 | 24 aa hypothetical protein | |||
| 6460 | Carboxyl-terminal protease, S41A family protein | |||
| ??? | R | HpyPE113ORF6670P (98% identity) | GANTC | HpyB14ORF6475P |
| 6470 | 56 aa hypothetical protein | |||
| 6475 | M | M.HpyPORF1318P (98% identity) | GANTC | M.HpyB14ORF6475P |
| 6480 | adenine specific DNA methyltransferase | |||
| 6475 | 159 aa hypothetical protein | |||
| 6480 | RM | HpyH016ORF6595P (89% identity) | HpyB14ORF6480P | |
| 6485 | nicotinate-nucleotide pyrophosphorylase | |||
| 6540 | adenine-specific DNA methylase | |||
| 6545 | R | HpyR02VIIIP (99% identity) | GATATC | HpyB14ORF6550P |
| 6550 | M | M.HpyPOR112VI (100% identity) | GATATC | M.HpyB14ORF6550P |
| 6555 | type III restriction enzyme M protein | |||
| 7060 | DNA polymerase I | |||
| ??? | S | S.HpySP303ORF7240P (95% identity) | S.HpyB14ORF7075P | |
| 7075 | RM | HpyMT5125ORF7210P (98% identity) | HpyB14ORF7075P | |
| 7080 | competence protein ComFC | |||
| 7210 | 355 aa hypothetical protein | |||
| 7215 | M | M.HpyUM067ORF4540P (100% identity) | M.HpyB14ORF7215P | |
| 7220 | endonuclease | |||
| 7215 | site-specific DNA-methyltransferase | |||
| 7220 | R | HpyT017ORF7585P (89% identity) | HpyB14ORF7220P | |
| 7225 | outer membrane protein (omp32) | |||
| 7300 | 152 aa hypothetical protein | |||
| 7305 | RM | HpyMT5119ORF6720P (89% identity) | HpyB14ORF7305P | |
| 7310 | 728 aa hypothetical protein | |||
| 7475 | 67 aa hypothetical protein | |||
| 7480 | M | M.HpyNCI28V (98% identity) | TGCA | M.HpyB14ORF7480P |
| 7485 | R | HpyL012IXP (99% identity) | TGCA | HpyB14ORF7480P |
| 7490 | ubiquinol cytochrome c oxidoreductase, | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6535 | transcriptional regulator | |||
| 6540 | M | M.HpyJ001ORF6655P (93% identity) | M.HpyB14ORF6540P | |
| 6545 | type II restriction endonuclease | |||
| 6550 | DNA adenine methylase | |||
| ??? | M | M.HpyCOL119ORF6690P (61% identity) | M.HpyB14ORF6555P | |
| 6565 | 155 aa hypothetical protein | |||
| 6700 | endonuclease | |||
| 6705 | M | M.HpyCOL105ORF330P (94% identity) | M.HpyB14ORF6705P | |
| 6710 | R | HpyCOL114XVP (84% identity) | HpyB14ORF6705P | |
| 6715 | biotin synthase | |||
| 7310 | 728 aa hypothetical protein | |||
| 7315 | R | Hpy5033ORF3630P (95% identity) | HpyB14ORF7320P | |
| ??? | M | M.HpyI003ORF470P (95% identity) | M.HpyB14ORF7320P | |
| 7325 | ATP-dependent DNA helicase RecG | |||