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Putative Roseiflexus castenholzii DSM 13941 RM systems
Ref: Copeland,A. et al. unpublished
REBASE ref # 10266
Complete sequence: 5,723,298 bp
GenBank #: CP000804 (NC_009767)
REBASE acronym: Rca13941
Org_num: 4838
All begin Rcas_
Type II | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
66 | TRAP dicarboxylate transporter- DctP subunit | |||
??? | M | M.RspRSORF4009P (38% identity) | CCGCGG | M.Rca13941ORF67P |
69 | 969 aa conserved hypothetical protein | |||
406 | 156 aa hypothetical protein | |||
407 | M | M2.TspHN54ORF7405P (85% identity) | CYCGRG | M.Rca13941ORF407P |
408 | R | LinBM01ORF24775P (68% identity) | CYCGRG | Rca13941ORF407P |
409 | 83 aa conserved hypothetical protein | |||
874 | 142 aa hypothetical protein | |||
875 | M | M.RspRSORF4513P (83% identity) | CGWCG | M.Rca13941ORF875P |
876 | 185 aa hypothetical protein | |||
883 | protein of unknown function DUF86 | |||
884 | M | M.RspRSORF233P (91% identity) | GATC | M.Rca13941ORF884P |
885 | asparaginyl-tRNA synthetase | |||
893 | sulphate transporter | |||
894 | M | M.RspRSORF4184P (69% identity) | GCCNNNNNGGC | M.Rca13941ORF894P |
895 | 274 aa conserved hypothetical protein | |||
956 | 80 aa hypothetical protein | |||
957 | R | CagVIIIP (44% identity) | Rca13941ORF958P | |
958 | M | M.Cspisl2ORF1600P (55% identity) | M.Rca13941ORF958P | |
959 | integral membrane sensor signal transduction | |||
984 | protein of unknown function DUF35 | |||
??? | M | M.RspRSORF1243P (16% identity) | GTCGAC | M.Rca13941ORF986P |
??? | R | 65 aa hypothetical protein | GTCGAC | Rca13941ORF986P |
988 | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
1073 | FAD dependent oxidoreductase | |||
1074 | M | M.CagV (88% identity) | TTCGAA | M.Rca13941ORF1074P |
1075 | R | CspMSGORFQP (68% identity) | TTCGAA | Rca13941ORF1074P |
1076 | AAA ATPase central domain protein | |||
1079 | Thymidine kinase | |||
1080 | M | M.Tam77409I (79% identity) | TTAA | M.Rca13941ORF1080P |
1081 | Mannose-6-phosphate isomerase | |||
1170 | prevent-host-death family protein | |||
1171 | M | M.RspRSORF4284P (79% identity) | GACGTC | M.Rca13941ORF1171P |
1172 | binding-protein-dependent transport systems | |||
1292 | 136 aa conserved hypothetical protein | |||
1293 | M | M.RspRSORF2183P (72% identity) | GACNNNGTC | M.Rca13941ORF1293P |
1294 | 297 aa conserved hypothetical protein | |||
1386 | 3-dehydroquinate synthase | |||
1387 | V | V.RspRSORF4109P (86% identity) | V.Rca13941ORF1389P | |
1388 | R | RspRSORF4109P (62% identity) | GGCGCC | Rca13941ORF1389P |
1389 | M | M.RspRSORF4109P (75% identity) | GGCGCC | M.Rca13941ORF1389P |
1390 | 646 aa hypothetical protein | |||
1424 | ribonuclease P protein component | |||
1425 | M | M.AteNZORF5390P (68% identity) | GAATTC | M.Rca13941ORF1425P |
1426 | R | AteNZORF5390P (43% identity) | GAATTC | Rca13941ORF1425P |
1427 | 60 kDa inner membrane insertion protein | |||
1607 | SMC domain protein | |||
1608 | M | M.RspRSORF239P (50% identity) | M.Rca13941ORF1608P | |
1609 | helicase domain protein | |||
1808 | methyltransferase | |||
??? | R | GcyVI4D9ORFFP (35% identity) | RGATCY | Rca13941ORF1808P |
1810 | M | M.CagIII (81% identity) | RGATCY | M.Rca13941ORF1808P |
1811 | aminotransferase class-III | |||
1937 | Rhodanese domain protein | |||
1938 | R | CspBV2CORF13725P (58% identity) | RCATGY | Rca13941ORF1939P |
1939 | M | M.EsaBS1I (62% identity) | CATG | M.Rca13941ORF1939P |
1940 | endoribonuclease L-PSP | |||
2009 | CBS domain containing protein | |||
2010 | M | M.RspRSORF375P (73% identity) | GANTC | M.Rca13941ORF2010P |
2011 | Dihydrolipoyllysine-residue succinyltransferase | |||
2132 | 278 aa hypothetical protein | |||
2133 | R | RspRSORF3042P (68% identity) | GGCC | Rca13941ORF2134P |
2134 | M | M.RspRSORF3042P (76% identity) | GGCC | M.Rca13941ORF2134P |
2135 | carboxyl-terminal protease | |||
2224 | thioesterase superfamily protein | |||
2225 | R | 168 aa hypothetical protein | GTCGAC | Rca13941ORF2225P |
2226 | uncharacterized restriction enzyme | |||
2225 | 168 aa hypothetical protein | |||
2226 | RM | TspHY593ORF10010P (87% identity) | Rca13941ORF2226P | |
2227 | Excinuclease ABC C subunit domain protein | |||
2227 | Excinuclease ABC C subunit domain protein | |||
??? | RM | TspNK55ORF3720AP (45% identity) | Rca13941ORF2228P | |
2230 | 87 aa hypothetical protein | |||
2230 | 87 aa hypothetical protein | |||
2231 | M | M.CagII (97% identity) | GANTC | M.Rca13941ORF2231P |
2232 | pyridoxamine 5-phosphate oxidase-related | |||
2235 | 153 aa conserved hypothetical protein | |||
2236 | M | M.Aba19ORF13040P (85% identity) | GATATC | M.Rca13941ORF2236P |
2237 | R | Aba19ORF13040P (79% identity) | GATATC | Rca13941ORF2236P |
2238 | 118 aa hypothetical protein | |||
2727 | glycosyl transferase family 39 | |||
??? | M | M.LkiPN5ORF20945P (48% identity) | TCGCGA | M.Rca13941ORF2728P |
2729 | 72 aa conserved hypothetical protein | |||
3081 | succinate dehydrogenase and fumarate reductase | |||
3082 | RM | 816 aa conserved hypothetical protein | Rca13941ORF3082P | |
3083 | UDP-glucose 6-dehydrogenase | |||
3592 | GHMP kinase | |||
3593 | M | M.RspRSORF953P (77% identity) | CATG | M.Rca13941ORF3593P |
3594 | thiamine pyrophosphate protein TPP binding | |||
3688 | pseudogene | |||
??? | M | M.CspMSGORFJP (62% identity) | CTGCAG | M.Rca13941ORF3689P |
??? | R | M.CspMSGORFJP (17% identity) | CTGCAG | Rca13941ORF3689P |
3690 | 145 aa hypothetical protein | |||
3692 | integron integrase | |||
3693 | M | M.Cba7II (97% identity) | TCCGGA | M.Rca13941ORF3693P |
3694 | R | CagVIP (94% identity) | TCCGGA | Rca13941ORF3693P |
3695 | pseudogene | |||
4036 | 200 aa hypothetical protein | |||
4037 | R | UbaMSORFA13P (44% identity) | GCCGGC | Rca13941ORF4038P |
4038 | M | M.UbaMSORFH17P (27% identity) | GCCGGC | M.Rca13941ORF4038P |
4039 | 70 aa conserved hypothetical protein | |||
4181 | amidohydrolase | |||
??? | R | 181 aa hypothetical protein Cagg_2241 | CGTACG | Rca13941ORF4183P |
4183 | M | M.SplZORFDP (60% identity) | CGTACG | M.Rca13941ORF4183P |
4184 | 189 aa conserved hypothetical protein | |||
4291 | dihydrodipicolinate synthetase | |||
??? | R | Ssp9410ORF14193P (57% identity) | GTCGAC | Rca13941ORF4293P |
4293 | M | M.RspRSORF1243P (73% identity) | GTCGAC | M.Rca13941ORF4293P |
4294 | glycosyl transferase group 1 | |||
4310 | tRNA delta(2)-isopentenylpyrophosphate | |||
4312 | M | M.CthsBORF9190P (48% identity) | TCGCGA | M.Rca13941ORF4312P |
4313 | major facilitator superfamily MFS_1 | |||
4396 | integron integrase | |||
4397 | M | M.PprC007ORFFP (59% identity) | CGATCG | M.Rca13941ORF4397P |
4398 | R | Csp4105ORF78520P (64% identity) | CGATCG | Rca13941ORF4397P |
4399 | 230 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
396 | 223 aa conserved hypothetical protein | |||
397 | M | M.AthUNI1ORF23810P (61% identity) | M.Rca13941ORF397P | |
398 | 132 aa conserved hypothetical protein | |||
399 | R | Aba19ORF5180P (77% identity) | Rca13941ORF397P | |
400 | 108 aa hypothetical protein | |||
1311 | 96 aa hypothetical protein | |||
??? | R | 73 aa hypothetical protein | Rca13941ORF1315P | |
1313 | 191 aa conserved hypothetical protein | |||
1314 | 91 aa hypothetical protein | |||
1315 | M | 273 aa hypothetical protein | M.Rca13941ORF1315P | |
1316 | 96 aa hypothetical protein | |||
2517 | 124 aa conserved hypothetical protein | |||
2518 | M | M.RspRSORF1826P (73% identity) | M.Rca13941ORF2518P | |
2519 | alpha/beta hydrolase fold |