Ref: Copeland,A. et al. unpublished

REBASE ref # 10266

Complete sequence: 5,723,298 bp

GenBank #: CP000804 (NC_009767)

REBASE acronym: Rca13941

Org_num: 4838

 

All begin Rcas_

Type II
ORF Gene Most similar Specificity Name
 
66 TRAP dicarboxylate transporter- DctP subunit
??? M M.RspRSORF4009P (0% identity) CCGCGG M.Rca13941ORF67P
69 969 aa conserved hypothetical protein
 
406 156 aa hypothetical protein
407 M M.Cae14535ORF17590P (0% identity) CYCGRG M.Rca13941ORF407P
408 R Cae14535ORF17590P (0% identity) CYCGRG Rca13941ORF407P
409 83 aa conserved hypothetical protein
 
874 142 aa hypothetical protein
875 M M.RspRSORF4513P (0% identity) CGWCG M.Rca13941ORF875P
876 185 aa hypothetical protein
 
883 protein of unknown function DUF86
884 M M.RspRSORF233P (0% identity) GATC M.Rca13941ORF884P
885 asparaginyl-tRNA synthetase
 
893 sulphate transporter
894 M M.RspRSORF4184P (0% identity) GCCNNNNNGGC M.Rca13941ORF894P
895 274 aa conserved hypothetical protein
 
956 80 aa hypothetical protein
957 R OcyMTP1ORFCP (0% identity) Rca13941ORF958P
958 M M.Cspisl2ORF1600P (0% identity) M.Rca13941ORF958P
959 integral membrane sensor signal transduction
 
984 protein of unknown function DUF35
??? M M.RspRSORF1243P (0% identity) GTCGAC M.Rca13941ORF986P
??? R CspYORF900P (0% identity) GTCGAC Rca13941ORF986P
988 RNA polymerase, sigma-24 subunit, ECF subfamily
 
1073 FAD dependent oxidoreductase
1074 M M.CagV (0% identity) TTCGAA M.Rca13941ORF1074P
1075 R CspMSGORFQP (0% identity) TTCGAA Rca13941ORF1074P
1076 AAA ATPase central domain protein
 
1079 Thymidine kinase
1080 M M.Tam77409I (0% identity) TTAA M.Rca13941ORF1080P
1081 Mannose-6-phosphate isomerase
 
1170 prevent-host-death family protein
1171 M M.RspRSORF4284P (0% identity) GACGTC M.Rca13941ORF1171P
1172 binding-protein-dependent transport systems
 
1292 136 aa conserved hypothetical protein
1293 M M.RspRSORF2183P (0% identity) GACNNNGTC M.Rca13941ORF1293P
1294 297 aa conserved hypothetical protein
 
1386 3-dehydroquinate synthase
1387 V V.RspRSORF4109P (0% identity) V.Rca13941ORF1389P
1388 R RspRSORF4109P (0% identity) GGCGCC Rca13941ORF1389P
1389 M M.RspRSORF4109P (0% identity) GGCGCC M.Rca13941ORF1389P
1390 646 aa hypothetical protein
 
1424 ribonuclease P protein component
1425 M M.Ipa43644ORF2679P (0% identity) GAATTC M.Rca13941ORF1425P
1426 R Ssp3A1ORFDP (0% identity) GAATTC Rca13941ORF1425P
1427 60 kDa inner membrane insertion protein
 
1607 SMC domain protein
1608 M M.RspRSORF239P (0% identity) M.Rca13941ORF1608P
1609 helicase domain protein
 
1808 methyltransferase
??? R CagIIIP (0% identity) RGATCY Rca13941ORF1808P
1810 M M.CagIII (0% identity) RGATCY M.Rca13941ORF1808P
1811 aminotransferase class-III
 
1937 Rhodanese domain protein
1938 R PbaD4VIP (0% identity) RCATGY Rca13941ORF1939P
1939 M M.EsaBS1I (0% identity) CATG M.Rca13941ORF1939P
1940 endoribonuclease L-PSP
 
2009 CBS domain containing protein
2010 M M.RspRSORF375P (0% identity) GANTC M.Rca13941ORF2010P
2011 Dihydrolipoyllysine-residue succinyltransferase
 
2132 278 aa hypothetical protein
2133 R RspRSORF3042P (0% identity) GGCC Rca13941ORF2134P
2134 M M.RspRSORF3042P (0% identity) GGCC M.Rca13941ORF2134P
2135 carboxyl-terminal protease
 
2224 thioesterase superfamily protein
2225 R Rca13941ORF4293P (0% identity) GTCGAC Rca13941ORF2225P
2226 uncharacterized restriction enzyme
 
2225 168 aa hypothetical protein
2226 RM UbaD11ORF10AP (0% identity) Rca13941ORF2226P
2227 Excinuclease ABC C subunit domain protein
 
2227 Excinuclease ABC C subunit domain protein
??? RM MaeORFEP (0% identity) Rca13941ORF2228P
2230 87 aa hypothetical protein
 
2230 87 aa hypothetical protein
2231 M M.CagII (0% identity) GANTC M.Rca13941ORF2231P
2232 pyridoxamine 5-phosphate oxidase-related
 
2235 153 aa conserved hypothetical protein
2236 M M.CspMSGORFOP (0% identity) GATATC M.Rca13941ORF2236P
2237 R UbaMSORFW14P (0% identity) GATATC Rca13941ORF2236P
2238 118 aa hypothetical protein
 
2727 glycosyl transferase family 39
??? M M.PamM71ORF4865P (0% identity) TCGCGA M.Rca13941ORF2728P
2729 72 aa conserved hypothetical protein
 
3081 succinate dehydrogenase and fumarate reductase
3082 RM RspRSORF2396P (0% identity) Rca13941ORF3082P
3083 UDP-glucose 6-dehydrogenase
 
3592 GHMP kinase
3593 M M.RspRSORF953P (0% identity) CATG M.Rca13941ORF3593P
3594 thiamine pyrophosphate protein TPP binding
 
3688 pseudogene
??? M M.CspMSGORFJP (0% identity) CTGCAG M.Rca13941ORF3689P
??? R M.CspMSGORFJP (0% identity) CTGCAG Rca13941ORF3689P
3690 145 aa hypothetical protein
 
3692 integron integrase
3693 M M.CagVI (0% identity) TCCGGA M.Rca13941ORF3693P
3694 R CagVIP (0% identity) TCCGGA Rca13941ORF3693P
3695 pseudogene
 
4036 200 aa hypothetical protein
4037 R AthUNI1ORF28870P (0% identity) GCCGGC Rca13941ORF4038P
4038 M M.Bca13669ORFDP (0% identity) GCCGGC M.Rca13941ORF4038P
4039 70 aa conserved hypothetical protein
 
4181 amidohydrolase
??? R CagORF2240P (0% identity) CGTACG Rca13941ORF4183P
4183 M M.CagORF2240P (0% identity) CGTACG M.Rca13941ORF4183P
4184 189 aa conserved hypothetical protein
 
4291 dihydrodipicolinate synthetase
??? R SalI (0% identity) GTCGAC Rca13941ORF4293P
4293 M M.RspRSORF1243P (0% identity) GTCGAC M.Rca13941ORF4293P
4294 glycosyl transferase group 1
 
4310 tRNA delta(2)-isopentenylpyrophosphate
4312 M M.CthBORF1769P (0% identity) TCGCGA M.Rca13941ORF4312P
4313 major facilitator superfamily MFS_1
 
4396 integron integrase
4397 M M.PprC007ORFFP (0% identity) CGATCG M.Rca13941ORF4397P
4398 R Csp4071ORF78590P (0% identity) CGATCG Rca13941ORF4397P
4399 230 aa hypothetical protein
Type III
ORF Gene Most similar Specificity Name
 
396 223 aa conserved hypothetical protein
397 M M.AthUNI1ORF23810P (0% identity) M.Rca13941ORF397P
398 132 aa conserved hypothetical protein
399 R CspMSGORFMP (0% identity) Rca13941ORF397P
400 108 aa hypothetical protein
 
1311 96 aa hypothetical protein
??? R UdeSRB1ORF12780P (0% identity) Rca13941ORF1315P
1313 191 aa conserved hypothetical protein
1314 91 aa hypothetical protein
1315 M M.UdeSRB1ORF12780P (0% identity) M.Rca13941ORF1315P
1316 96 aa hypothetical protein
 
2517 124 aa conserved hypothetical protein
2518 M M.RspRSORF1826P (0% identity) M.Rca13941ORF2518P
2519 alpha/beta hydrolase fold