Helicobacter pylori P79 |
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Putative Helicobacter pylori P79 RM systems
Ref: Clancy,C.D. et al. J. Bacteriol. 194 (9), 2402 (2012)
REBASE ref # 14297
GenBank #: AIHW00000000
REBASE acronym: HpyP79
Org_num: 8706
All begin HP79_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4142 | S | S.HpyS299ORF3810P (98% identity) | S.HpyP79ORF4147P | |
| 4147 | type I restriction enzyme M protein | |||
| 4152 | M | M.HpyS299ORF3810P (100% identity) | M.HpyP79ORF4147P | |
| ??? | R | HpySW34ORF2315P (5% identity) | HpyP79ORF4147P | |
| 4162 | 44 aa hypothetical protein | |||
| 6074 | 235 aa hypothetical protein | |||
| 6079 | R | HpyS299ORF7180P (99% identity) | HpyP79ORF6084P | |
| 6084 | M | M.HpyS299ORF7180P (100% identity) | M.HpyP79ORF6084P | |
| 6089 | S | S.HpyRif2ORF7260P (100% identity) | S.HpyP79ORF6084P | |
| 6104 | biotin synthase | |||
| 2789 | 83 aa hypothetical protein | |||
| 2794 | M | M.HpyRif2ORF4365P (100% identity) | M.HpyP79ORF2794P | |
| 2799 | S | S1.HpyCGRORF861P (100% identity) | S1.HpyP79ORF2794P | |
| 2804 | S | S.HpyS299ORF1890P (64% identity) | S2.HpyP79ORF2794P | |
| 2809 | 33 aa hypothetical protein | |||
| 2814 | R | HpyRif2ORF4365P (100% identity) | HpyP79ORF2794P | |
| 2819 | hydroxyethylthiazole kinase | |||
| 3141 | cadmium-transporting ATPase, P-type (cadA) | |||
| 3146 | S | S.HpyS299IV (97% identity) | S.HpyP79ORF3146P | |
| 3151 | 33 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | hypothetical protein | |||
| ??? | M | M.HpyRif2ORFDP (100% identity) | GTAC | M.HpyP79ORFAP |
| 4012 | DNA gyrase subunit B | |||
| 4672 | alpha-1,2-fucosyltransferase | |||
| 4677 | M | M.HpyS299V (99% identity) | GATC | M.HpyP79ORF4677P |
| 4682 | R | HpyS299VP (100% identity) | GATC | HpyP79ORF4677P |
| 4687 | 59 aa hypothetical protein | |||
| 4886 | sodium/proline symporter | |||
| 4891 | M | M.HpyS299VIII (100% identity) | CCTTC | M.HpyP79ORF4891P |
| 4896 | R | HpyS299VIIIP (100% identity) | CCTTC | HpyP79ORF4891P |
| ??? | restriction endonuclease | |||
| 4896 | 419 aa hypothetical protein | |||
| ??? | R | restriction endonuclease | CCTC | HpyP79ORF4911P |
| 4911 | M | M1.HpyS299III (100% identity) | CCTC | M2.HpyP79ORF4911P |
| 4916 | M | M2.HpyS299IIIP (100% identity) | CCTC | M1.HpyP79ORF4911P |
| 4921 | 330 aa hypothetical protein | |||
| 5501 | ubiquinol cytochrome c oxidoreductase, | |||
| 5506 | R | HpyS299ORF6490P (98% identity) | TGCA | HpyP79ORF5511P |
| 5511 | M | M.HpyRif2ORF7965P (100% identity) | TGCA | M.HpyP79ORF5511P |
| 400 | 449 aa hypothetical protein | |||
| 405 | RM | M.HpyAXVIII (99% identity) | HpyP79ORF405P | |
| 410 | pseudogene | |||
| 5754 | protease | |||
| 5759 | R | HpyS299ORF8615P (100% identity) | GANTC | HpyP79ORF5764P |
| 5764 | M | M.HpyS299ORF8665P (100% identity) | GANTC | M.HpyP79ORF5764P |
| 5774 | RM | HpyRif2ORF6990P (22% identity) | HpyP79ORF5774P | |
| 5779 | RM | HpyS299ORF8675P (97% identity) | HpyP79ORF5779P | |
| 5784 | nicotinate-nucleotide pyrophosphorylase | |||
| 5844 | response regulator | |||
| 5849 | R | HpyS299ORF7360P (100% identity) | GAAGA | HpyP79ORF5854P |
| 5854 | M | M2.HpyS299ORF7360P (100% identity) | GAAGA | M1.HpyP79ORF5854P |
| 5859 | M | M2.HpySWT04XIII (100% identity) | GAAGA | M2.HpyP79ORF5854P |
| ??? | mod gene product | |||
| 6411 | M | M.HpyS299II (100% identity) | ATTAAT | M.HpyP79ORF6411P |
| 6416 | 282 aa hypothetical protein | |||
| 6426 | GTP-binding protein TypA | |||
| ??? | M | M.HpyRif2ORFEP (100% identity) | ACNGT | M.HpyP79ORFCP |
| 6441 | R | HpyRif2ORFEP (100% identity) | ACNGT | HpyP79ORFCP |
| ??? | type II DNA modification | |||
| 6441 | 170 aa hypothetical protein | |||
| ??? | M | M.HpyS299ORF3700P (94% identity) | ACGT | M.HpyP79ORF6446P |
| 6456 | R | HpyS299ORF3700P (100% identity) | ACGT | HpyP79ORF6446P |
| 6461 | catalase-like protein | |||
| 8597 | exodeoxyribonuclease VII large subunit | |||
| 8602 | M | M.HpyS299VII (100% identity) | TCGA | M.HpyP79ORF8602P |
| 8607 | 42 aa hypothetical protein | |||
| 8612 | 82 aa hypothetical protein | |||
| ??? | R | HpyS299ORF4845P (100% identity) | CCGG | HpyP79ORF8622P |
| 8622 | M | M.HpyS299ORF4845P (100% identity) | CCGG | M.HpyP79ORF8622P |
| 8627 | ATP-dependent protease binding subunit (clpB) | |||
| 797 | 202 aa hypothetical protein | |||
| 802 | R | HpyRif2ORF1870P (100% identity) | TCNNGA | HpyP79ORF807P |
| ??? | M | M.HpyS299ORF4305P (80% identity) | TCNNGA | M.HpyP79ORF807P |
| 817 | biotin carboxylase | |||
| 8997 | 144 aa hypothetical protein | |||
| 9002 | M | M.HpyS299ORF435P (100% identity) | GCGC | M.HpyP79ORF9002P |
| 9007 | 67 aa hypothetical protein | |||
| 1005 | pseudogene | |||
| ??? | RM | HpyRif2ORFAP (100% identity) | GCGTA | HpyP79ORFDP |
| 1025 | 179 aa hypothetical protein | |||
| 1250 | 191 aa hypothetical protein | |||
| 1255 | RM | HpyS299ORF6805P (94% identity) | HpyP79ORF1255P | |
| 1260 | type IIS restriction enzyme R protein (BCGIB) | |||
| 1630 | rep helicase, single-stranded DNA-dependent | |||
| 1635 | M | M.HpyRif2ORF4690P (100% identity) | GTNNAC | M.HpyP79ORF1635P |
| 1640 | R | HpyS299ORF1570P (99% identity) | GTNNAC | HpyP79ORF1635P |
| 1645 | flagellar hook protein FlgE | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5859 | type IIS restriction enzyme M2 protein (mod) | |||
| ??? | M | M.HpyRif2ORF7075P (100% identity) | TCAG | M.HpyP79ORFBP |
| 5874 | R | HpyS299ORF7350P (100% identity) | TCAG | HpyP79ORFBP |
| 5879 | rod shape-determining protein MreC | |||
| 983 | ATP-dependent DNA helicase RecG | |||
| 988 | M | M.HpyS299ORF6570P (68% identity) | M.HpyP79ORF988P | |
| 995 | M | type III R-M system modification enzyme | M.HpyP79ORF995P | |
| 1000 | R | HpyS299ORF6570P (100% identity) | HpyP79ORF995P | |
| 1005 | pseudogene | |||
| 2119 | 54 aa hypothetical protein | |||
| 2124 | M | M.HpyS299VI (100% identity) | GCAG | M.HpyP79ORF2124P |
| 2129 | R | HpyS299VIP (97% identity) | GCAG | HpyP79ORF2124P |
| 2134 | 2-oxoglutarate-acceptor oxidoreductase subunit | |||