Helicobacter pylori NCTC 11637 |
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Putative Helicobacter pylori NCTC 11637 RM systems
Ref: Clancy,C.D. et al. J. Bacteriol. 194 (9), 2402 (2012)
REBASE ref # 14297
GenBank #: AIHX00000000
REBASE acronym: Hpy17874
Org_num: 8701
All begin HP17_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5965 | R | Hpy1601ORF2470P (100% identity) | Hpy17874ORF5965P | |
| 5970 | hydroxyethylthiazole kinase | |||
| 8144 | S | S.HpyBR4ORF3805P (44% identity) | S.Hpy17874ORF8144P | |
| 8516 | S | restriction endonuclease | S.Hpy17874ORF8516P | |
| 8521 | Cadmium, zinc and cobalt-transporting ATPase | |||
| 2464 | S | S.Hpy1601ORF750P (100% identity) | S.Hpy17874ORF2469P | |
| 2469 | M | M.Hpy1601ORF750P (100% identity) | M.Hpy17874ORF2469P | |
| 2474 | R | Hpy1601ORF750P (95% identity) | Hpy17874ORF2469P | |
| 3027 | 631 aa Hypothetical protein | |||
| ??? | R | Hpy11638ORF1P (100% identity) | Hpy17874ORFAP | |
| 3189 | S | S.HpyP109ORF4000P (40% identity) | S.Hpy17874ORF3194P | |
| ??? | M | M.Hpy1601ORF2470P (91% identity) | M.Hpy17874ORF3194P | |
| 3204 | integral membrane protein | |||
| 4164 | 30 aa Hypothetical protein | |||
| 4169 | S | S.Hpy1601ORF6035P (100% identity) | S.Hpy17874ORF4174P | |
| 4174 | M | M.Hpy1601ORF6035P (100% identity) | M.Hpy17874ORF4174P | |
| 4179 | R | Hpy1601ORF6035P (100% identity) | Hpy17874ORF4174P | |
| 4184 | 235 aa Hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6337 | 270 aa Hypothetical protein | |||
| 6342 | M | M.HpyI012VIII (100% identity) | CCNNGG | M.Hpy17874ORF6342P |
| 6347 | type II restriction enzyme | |||
| 460 | 202 aa Hypothetical protein | |||
| 465 | R | Hpy1601ORF3405P (100% identity) | TCNNGA | Hpy17874ORF470P |
| 470 | M | M.Hpy1601ORF3405P (98% identity) | TCNNGA | M.Hpy17874ORF470P |
| 475 | biotin carboxylase | |||
| 6232 | glycerol-3-phosphate dehydrogenase | |||
| 6237 | RM | Hpy1601ORF1560P (100% identity) | Hpy17874ORF6237P | |
| 6242 | 131 aa Hypothetical protein | |||
| 551 | 330 aa Hypothetical protein | |||
| 556 | M | M1.Hpy1601ORF6645P (100% identity) | CCTC | M1.Hpy17874ORF556P |
| 561 | M | M2.Hpy1601ORF6645P (100% identity) | CCTC | M2.Hpy17874ORF556P |
| 566 | R | Hpy1601ORF6645P (96% identity) | CCTC | Hpy17874ORF556P |
| 571 | 419 aa Hypothetical protein | |||
| 566 | restriction endonuclease | |||
| 571 | R | HpyI012XIIIP (100% identity) | CCTTC | Hpy17874ORF576P |
| 576 | M | M.Hpy1601ORF6665P (100% identity) | CCTTC | M.Hpy17874ORF576P |
| 581 | Symporter, SSS family (Proline Permease) | |||
| 7007 | nicotinate-nucleotide pyrophosphorylase | |||
| 7012 | RM | Hpy1601ORF5220P (68% identity) | Hpy17874ORF7012P | |
| 7017 | RM | 268 aa Hypothetical protein | Hpy17874ORF7017P | |
| 7022 | 87 aa Hypothetical protein | |||
| 7027 | M | M.Hpy1601ORF5215P (100% identity) | GANTC | M.Hpy17874ORF7027P |
| ??? | R | Hpy1601ORF5215P (100% identity) | GANTC | Hpy17874ORF7027P |
| 7042 | carboxyl-terminal protease | |||
| 7139 | catalase-like protein | |||
| 7144 | R | Hpy1601ORF3595P (100% identity) | ACGT | Hpy17874ORF7154P |
| 7154 | M | M.Hpy1601ORF3595P (100% identity) | ACGT | M.Hpy17874ORF7154P |
| 7159 | type II restriction endonuclease | |||
| 7154 | type II DNA modification enzyme | |||
| 7159 | R | Hpy1601ORF3605P (88% identity) | ACNGT | Hpy17874ORF7164P |
| 7164 | M | M.Hpy1601ORF3605P (100% identity) | ACNGT | M.Hpy17874ORF7164P |
| 7169 | GTP-binding protein TypA | |||
| 7179 | 282 aa Hypothetical protein | |||
| 7184 | M | M.Hpy1601ORF3620P (100% identity) | ATTAAT | M.Hpy17874ORF7184P |
| 7507 | DNA gyrase subunit B | |||
| 7512 | M | 71 aa Hypothetical protein | GTAC | M.Hpy17874ORF7512AP |
| 7517 | M | M.Hpy1601ORF3865P (100% identity) | GTAC | M.Hpy17874ORF7512BP |
| ??? | R | Hpy1601ORF3865P (100% identity) | GTAC | Hpy17874ORF7512P |
| 7532 | 406 aa Hypothetical protein | |||
| 806 | HrgA protein | |||
| 811 | M | M.Hpy1601ORF6860P (100% identity) | GATC | M.Hpy17874ORF811P |
| 816 | Alpha-1,2-fucosyltransferase | |||
| 8374 | restriction enzyme | |||
| 8379 | R | R2.HpyI012ORF900P (100% identity) | Hpy17874ORF8349P | |
| 8384 | sialic acid synthase | |||
| 1433 | 420 aa Hypothetical protein | |||
| 1438 | M | M.Hpy1601ORF4845P (100% identity) | GATATC | M.Hpy17874ORF1438P |
| 1443 | R | HpyJO6IXP (100% identity) | GATATC | Hpy17874ORF1438P |
| 1448 | adenine-specific DNA methylase | |||
| 2544 | Rep helicase | |||
| 2549 | M | M.Hpy1601ORF2765P (99% identity) | GTNNAC | M.Hpy17874ORF2549P |
| 2554 | R | Hpy1601ORF2765P (100% identity) | GTNNAC | Hpy17874ORF2549P |
| 2559 | flagellar hook protein FlgE | |||
| 2803 | 94 aa Hypothetical protein | |||
| 2808 | M | M.HpyI012I (100% identity) | CATG | M.Hpy17874ORF2808P |
| 2813 | 222 aa Hypothetical protein | |||
| 3474 | 144 aa Hypothetical protein | |||
| 3479 | M | M.HpyI012XVI (98% identity) | GCGC | M.Hpy17874ORF3479P |
| 3484 | 67 aa Hypothetical protein | |||
| 3804 | DNA polymerase I | |||
| 3809 | S | S.Hpy1601ORF5720P (100% identity) | S.Hpy17874ORF3814P | |
| 3814 | RM | Hpy1601ORF5720P (98% identity) | Hpy17874ORF3814P | |
| 3819 | 191 aa Hypothetical protein | |||
| 3954 | permease | |||
| 3959 | M | M1.Hpy1601ORF5855P (100% identity) | CCATC | M1.Hpy17874ORF3959P |
| 3964 | M | M2.HpyNCI55XII (100% identity) | GATGG | M2.Hpy17874ORF3959P |
| 3969 | R | Hpy1601ORF5855P (100% identity) | CCATC | Hpy17874ORF3959P |
| 3979 | outer membrane protein (omp32) | |||
| 4074 | 39 aa Hypothetical protein | |||
| 4079 | RM | type II S restriction-modification protein | Hpy17874ORF4079P | |
| 4084 | RM | Hpy1601ORF5950P (94% identity) | Hpy17874ORF4084P | |
| 4089 | pseudogene | |||
| 4281 | 67 aa Hypothetical protein | |||
| 4286 | M | M.Hpy1601ORF6120P (100% identity) | TGCA | M.Hpy17874ORF4286P |
| 4291 | R | Hpy1601ORF6120P (98% identity) | TGCA | Hpy17874ORF4286P |
| 4296 | ubiquinol cytochrome c oxidoreductase, | |||
| 4990 | exodeoxyribonuclease VII large subunit | |||
| 4995 | M | M.HpyC102XII (98% identity) | TCGA | M.Hpy17874ORF4995P |
| 5000 | 204 aa Hypothetical protein | |||
| 5000 | 204 aa Hypothetical protein | |||
| 5005 | R | type II R-M system restriction endonuclease | CCGG | Hpy17874ORF5010P |
| 5010 | M | M.Hpy1601ORF7755P (100% identity) | CCGG | M.Hpy17874ORF5010P |
| 5015 | ATP-dependent protease binding subunit/heat | |||
| 5265 | polysaccharide deacetylase | |||
| 5270 | R | HpyI026ORF1565P (97% identity) | CTNAG | Hpy17874ORF5280P |
| 5280 | M | M.Hpy1601ORF100P (100% identity) | CTNAG | M.Hpy17874ORF5280P |
| 5285 | 122 aa Hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6862 | R | Hpy1601ORF5350P (98% identity) | Hpy17874ORF6872P | |
| 6872 | M | M.Hpy1601ORF5350BP (56% identity) | M.Hpy17874ORF6872P | |
| 6877 | endonuclease G | |||
| 6932 | rod shape-determining protein MreC | |||
| 6937 | R | Hpy1601ORF5290P (100% identity) | Hpy17874ORF6942P | |
| ??? | M | M.Hpy1601ORF5290P (100% identity) | M.Hpy17874ORF6942P | |
| 6952 | response regulator | |||
| 1443 | type II restriction endonuclease | |||
| ??? | M | hypothetical protein | M.Hpy17874ORF1448P | |
| 1458 | 485 aa Hypothetical protein | |||
| 4084 | type IIS restriction-modification protein | |||
| 4089 | R | Hpy1601ORF5960P (100% identity) | Hpy17874ORF4099P | |
| 4099 | M | M.Hpy1601ORF5960P (30% identity) | M.Hpy17874ORF4099P | |
| 4104 | M | M.HpySWT08ORF7525P (66% identity) | M.Hpy17874ORF4104P | |
| 4109 | ATP-dependent DNA helicase RecG | |||
| 5640 | 54 aa Hypothetical protein | |||
| 5645 | M | M.Hpy1601ORF1185P (100% identity) | M.Hpy17874ORF5645P | |
| 5650 | R | Hpy1601ORF1185P (100% identity) | CTGCAG | Hpy17874ORF5645P |
| 5655 | 2-oxoglutarate-acceptor oxidoreductase subunit | |||