Escherichia coli P12b |
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Putative Escherichia coli P12b RM systems
Ref: Liu,B. et al. Nucleic Acids Res. (2012) In press
REBASE ref # 14183
Complete sequence: 4,935,294 bp
GenBank #: CP002291
REBASE acronym: EcoP12b
Org_num: 8585
All begin P12B_c
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4426 | HSP20-like domain protein | |||
| 4427 | R | EcoR31ORF16485P (100% identity) | EcoP12bORF4429P | |
| 4428 | S | S.EcoSH3ORF25175P (100% identity) | S.EcoP12bORF4429P | |
| 4429 | M | M.Esp9308ORFIP (100% identity) | M.EcoP12bORF4429P | |
| 4430 | Mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1063 | HD superfamily hydrolase | |||
| 1064 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.EcoP12bDcmP |
| 1065 | V | V.SsoSE61DcmP (100% identity) | V.EcoP12bDcmP | |
| 1066 | 306 aa hypothetical protein | |||
| 1101 | replicative DNA helicase | |||
| 1102 | M | M.Eco11106ORF3243P (100% identity) | GATC | M.EcoP12bORF1102P |
| 1103 | DNA-binding protein Roi | |||
| 2746 | 273 aa hypothetical protein | |||
| 2747 | M | M.EcoZF34ORF21880P (100% identity) | GATC | M.EcoP12bORF2747P |
| 2748 | 113 aa hypothetical protein | |||
| 3370 | DNA-binding protein fis | |||
| 3371 | M | M.Eco9040ORF510P (100% identity) | ATGCAT | M.EcoP12bORF3371P |
| 3372 | IS1 transposase | |||
| 3484 | Ribulose-phosphate 3-epimerase | |||
| 3485 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoP12bDamP |
| 3486 | Sporulation related repeat protein | |||
| 4167 | integrase | |||
| 4168 | RM | LadE1ORF15685P (68% identity) | EcoP12bORF4168P | |
| 4169 | DEAD/DEAH box helicase-like protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4429 | Type I restriction-modification system | |||
| 4430 | R | EfeE4C07MrrP (95% identity) | EcoP12bMrrP | |
| 4431 | GTPase | |||