Escherichia coli O55:H7 RM12579 |
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Putative Escherichia coli O55:H7 RM12579 RM systems
Ref: Kyle,J.L. et al. unpublished
REBASE ref # 14107
| Sequence length: | GenBank #: | |
| Chromosome: | 5,263,980 bp | CP003109 |
| plasmid p12579_1: | 94,015 bp | CP003110 |
| plasmid p12579_2: | 66,078 bp | CP003111 |
| plasmid p12579_5: | 5,954 bp | CP003114 |
REBASE acronym: Eco12579
Org_num: 8552
All begin ECO55CA74_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24810 | endoribonuclease SymE | |||
| 24815 | S | S.EcoTB182AORF22480P (100% identity) | CACNNNNNNNCTGG | S.Eco12579ORF24820P |
| 24820 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco12579ORF24820P |
| 24825 | R | EcoTB182AORF22480P (100% identity) | CACNNNNNNNCTGG | Eco12579ORF24820P |
| 24840 | GTP-binding protein YjiA | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1440 | recombination protein ninB from phage origin | |||
| 1445 | M | M.EcoTB182AORF20675P (100% identity) | GATC | M.Eco12579ORF1445P |
| 1450 | NinE protein | |||
| 3220 | 93 aa hypothetical protein | |||
| 3225 | M | M.EcoTB182AORF18900P (100% identity) | GATC | M.Eco12579ORF3225P |
| 3230 | 53 aa hypothetical protein | |||
| 11595 | DMT superfamily transporter inner | |||
| 11600 | V | V.EcosPA8DcmP (100% identity) | V.Eco12579DcmP | |
| 11605 | M | M.EcoTB182ADcmP (100% identity) | CCWGG | M.Eco12579DcmP |
| 11610 | hydrolase | |||
| 12995 | 616 aa hypothetical protein | |||
| 13000 | M | M.EcoS6995ORFAP (100% identity) | M.Eco12579ORF13000P | |
| 13005 | 65 aa hypothetical protein | |||
| 19005 | global DNA-binding transcriptional dual | |||
| ??? | M | M.EcoDEC5DORFAP (100% identity) | ATGCAT | M.Eco12579ORF19010P |
| 19015 | 59 aa hypothetical protein | |||
| 19495 | ribulose-phosphate 3-epimerase | |||
| 19500 | M | DNA adenine methylase | GATC | M.Eco12579DamP |
| 19505 | cell division protein DamX | |||
| 24510 | 204 aa hypothetical protein | |||
| 24515 | M | M.EcoTB182AORF22780P (100% identity) | M.Eco12579ORF24515P | |
| 24520 | 370 aa hypothetical protein | |||
| 24585 | Helicase family protein | |||
| 24590 | RM | EcoTB182AORF22705P (100% identity) | Eco12579ORF24590P | |
| plasmid p12579_1 | ||||
| 25683 | recombination associated protein | |||
| 25688 | M | M.Eco16502ORF5023P (100% identity) | M.Eco12579ORF25688P | |
| 25693 | 109 aa hypothetical protein | |||
| plasmid p12579_2 | ||||
| 26279 | YfdA | |||
| 26284 | M | M.EcoTB182AORF25840P (100% identity) | M.Eco12579ORF26284P | |
| 26289 | 73 aa hypothetical protein | |||
| plasmid p12579_5 | ||||
| 26419 | R | Eco10674ORF2P (100% identity) | Eco12579ORF26424P | |
| 26424 | M | M.Eco10674ORF3P (100% identity) | M.Eco12579ORF26424P | |
| 26429 | regulatory protein Rop | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24795 | YjiS | |||
| ??? | R | SflLIN8GmrSDP (47% identity) | Eco12579GmrSDP | |
| ??? | R | EcoS946GmrDP (93% identity) | Eco12579GmrDP | |
| 24810 | endoribonuclease SymE | |||