|
Putative Salmonella enterica subsp. enterica serovar Typhi P-stx-12 RM systems
Ref: Ong,S.Y. et al. unpublished
REBASE ref # 14196
Sequence length: | GenBank #: | |
Chromosome: | 4,768,352 bp | CP003278 |
plasmid unnamed: | 181,431 bp | CP003279 |
REBASE acronym: Sen12
Org_num: 8595
All begin STBHUCCB_, STBHUCCB_p
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
48260 | Endoribonuclease symE | |||
48270 | S | S.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | S.Sen12ORF48290P |
48290 | M | M.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | M.Sen12ORF48290P |
48300 | R | StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | Sen12ORF48290P |
48310 | Mrr restriction system protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
9510 | 231 aa hypothetical protein | |||
9520 | M | M.StyTDcmP (100% identity) | CCWGG | M.Sen12DcmP |
9530 | V | V.StyTDcmP (100% identity) | V.Sen12DcmP | |
9540 | inner membrane transporter yedA | |||
20260 | 190 aa hypothetical protein | |||
20270 | M | M.StyTORF1914P (100% identity) | M.Sen12ORF20270P | |
20280 | 174 aa hypothetical protein | |||
34890 | DNA-binding protein fis | |||
34900 | M | adenine-specific methylase | ATGCAT | M.Sen12ORF34900P |
34910 | 54 aa hypothetical protein | |||
42540 | 425 aa hypothetical protein | |||
42550 | M | DNA adenine methylase | GATC | M.Sen12DamP |
42560 | Ribulose-phosphate 3-epimerase | |||
plasmid unnamed | ||||
850 | 273 aa hypothetical protein | |||
860 | M | M.Ype21801ORF197P (100% identity) | M1.Sen12ORF860P | |
870 | DNA-binding plasmid partitioning protein | |||
2010 | nuclease-like protein | |||
2020 | M | M.StypAKU1ORFCP (100% identity) | CCWGG | M.Sen12ORF2020P |
2030 | 55 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
9360 | Prepilin-type N-cleavage/methylation domain | |||
9370 | R | StyTORF872P (100% identity) | Sen12ORF9380P | |
9380 | M | M.SmaBWH35ORF16840P (100% identity) | M.Sen12ORF9380P | |
9390 | 462 aa hypothetical protein | |||
26530 | Cytochrome bd ubiquinol oxidase, subunit I | |||
??? | R | StyTORF2507P (100% identity) | CAGAG | Sen12ORF26560P |
26560 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen12ORF26560P |
26570 | Major facilitator superfamily (MFS_1) | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
48300 | Type I restriction enzyme EcoKI R protein | |||
48310 | R | StyTMrrP (100% identity) | Sen12MrrP | |
48320 | 95 aa hypothetical protein | |||
Orphan M | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
20370 | 354 aa hypothetical protein | |||
??? | M | M.StyTORF1926P (100% identity) | GATC | M.Sen12ORF20380P |
20390 | phage excisionase | |||
35910 | 75 aa hypothetical protein | |||
35920 | M | M.StyTORF3409P (100% identity) | GATC | M.Sen12ORF35920P |
35930 | replication endonuclease from prophage-like | |||
45840 | pseudogene | |||
45850 | M | M.StyTORF4329P (100% identity) | GATC | M.Sen12ORF45850P |
45860 | Exonuclease |