Helicobacter pylori B45 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori B45 RM systems
Ref: Lehours,P. et al. MBio 2 (6), E00239-11 (2011)
REBASE ref # 13778
GenBank #: AFAO00000000
REBASE acronym: HpyB45
Org_num: 7984
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | S.HpyAL3ORF4045P (94% identity) | S.HpyB45ORFH1P | |
| ??? | M | M.HpyPO09II (96% identity) | M.HpyB45ORFH1P | |
| ??? | R | HpySP414ORF7230P (96% identity) | HpyB45ORFH1P | |
| ??? | 235 aa hypothetical protein HPP12_1511 | |||
| ??? | S | S.HpyCR2ORFAP (97% identity) | S.HpyB45ORFGP | |
| ??? | M | M.HpyKH1ORFLP (83% identity) | M.HpyB45ORFQP | |
| ??? | S | S.HpyCOL6XIX (95% identity) | S.HpyB45ORFQP | |
| ??? | R | HpyNG10XIVP (95% identity) | HpyB45ORFQP | |
| ??? | S | S.HpyL015ORF2165P (98% identity) | S.HpyB45ORFB1P | |
| ??? | M | type I restriction enzyme modification subunit | M.HpyB45ORFB1P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | HpyPR02ORF2440P (97% identity) | ACGT | HpyB45ORFI1P |
| ??? | M | M.HpySP310ORF2420P (97% identity) | ACGT | M.HpyB45ORFI1P |
| ??? | type II restriction endonuclease | |||
| ??? | DD-heptosyltransferase | |||
| ??? | M | M.HpySP503II (97% identity) | ATTAAT | M.HpyB45ORFK1P |
| ??? | type II DNA modification | |||
| ??? | R | HpyU414IIP (98% identity) | ACNGT | HpyB45ORFJ1P |
| ??? | M | M.HpySP325II (98% identity) | ACNGT | M.HpyB45ORFJ1P |
| ??? | DD-heptosyltransferase | |||
| ??? | M | M.HpySWT01VIII (99% identity) | CCNNGG | M.HpyB45ORFAP |
| ??? | R | HpyI015VP (99% identity) | CCNNGG | HpyB45ORFAP |
| ??? | adenine-specific DNA methylase | |||
| ??? | R | HpyJO6IXP (98% identity) | GATATC | HpyB45ORFG1P |
| ??? | M | M.HpyJO6IX (99% identity) | GATATC | M.HpyB45ORFG1P |
| ??? | R | HpyU119XIP (99% identity) | TGCA | HpyB45ORFD1P |
| ??? | M | M.HpyI028VII (98% identity) | TGCA | M.HpyB45ORFD1P |
| ??? | M | M.HpyNCI56VI (98% identity) | GTAC | M.HpyB45ORFBP |
| ??? | R | HpyNCI40ORFLP (96% identity) | GTAC | HpyB45ORFBP |
| ??? | R | HpyL023XIIP (98% identity) | CCATC | HpyB45ORFCP |
| ??? | M | M1.HpyU432IV (92% identity) | CCATC | M2.HpyB45ORFCP |
| ??? | M | M2.HpyU206IV (99% identity) | GATGG | M1.HpyB45ORFCP |
| ??? | RM | HpySP18ORF7165P (98% identity) | HpyB45ORFDP | |
| ??? | S | S.HpyBR2ORF7085P (92% identity) | S.HpyB45ORFDP | |
| ??? | R | HpyNG06VIP (98% identity) | GAAGA | HpyB45ORFFP |
| ??? | M | M2.HpyAL5V (99% identity) | GAAGA | M1.HpyB45ORFFP |
| ??? | M | M2.HpySP324V (94% identity) | GAAGA | M2.HpyB45ORFFP |
| ??? | R | HpyR11IXP (97% identity) | GANTC | HpyB45ORFEP |
| ??? | M | M.HpyL021V (98% identity) | GANTC | M.HpyB45ORFEP |
| ??? | R | HpyPO103VIIP (89% identity) | TCNNGA | HpyB45ORFJP |
| ??? | M | M.HpyBGR1XII (98% identity) | TCNNGA | M.HpyB45ORFJP |
| ??? | R | HpyAL1IP (94% identity) | CATG | HpyB45ORFMP |
| ??? | M | M.HpyU008I (98% identity) | CATG | M.HpyB45ORFMP |
| ??? | R | 107 aa hypothetical protein HPB8_315 | TCNGA | HpyB45ORFNP |
| ??? | M | M.HpySP101XI (98% identity) | TCNGA | M.HpyB45ORFNP |
| ??? | M | M.HpyCRI6XII (92% identity) | GTNNAC | M.HpyB45ORFOP |
| ??? | R | HpySP509IXP (88% identity) | GTNNAC | HpyB45ORFOP |
| ??? | M | M.HpySP323ORF7885P (97% identity) | M.HpyB45ORFPP | |
| ??? | type III restriction enzyme | |||
| ??? | RM | HpyKH6ORFUP (78% identity) | HpyB45ORFSP | |
| ??? | M | M.HpySP107XI (95% identity) | GCGC | M.HpyB45ORFTP |
| ??? | M | M1.HpyCO9IV (97% identity) | CCTC | M1.HpyB45ORFUP |
| ??? | M | M2.HpyI003VIIIP (98% identity) | CCTC | M2.HpyB45ORFUP |
| ??? | M | M.HpySP19X (97% identity) | GATC | M.HpyB45ORFVP |
| ??? | RM | HpyLIM10ORF3715P (88% identity) | HpyB45ORFWP | |
| ??? | R | HpyNCI14XIIP (97% identity) | CTNAG | HpyB45ORFZP |
| ??? | M | M.HpyCOL107VI (99% identity) | CTNAG | M.HpyB45ORFZP |
| ??? | M | M.HpyDO11ORF1710P (99% identity) | GCNGC | M.HpyB45ORFA1P |
| ??? | M | M.HpyIS6XI (97% identity) | TCGA | M.HpyB45ORFXP |
| ??? | endonuclease MjaVIP | |||
| ??? | type II DNA modification (methyltransferase | |||
| ??? | R | HpyLI23ORF1280P (91% identity) | CCGG | HpyB45ORFYP |
| ??? | M | M.HpyH025IV (99% identity) | CCGG | M.HpyB45ORFYP |
| ??? | R | HpySP203VIIP (85% identity) | GAATTC | HpyB45ORFC1P |
| ??? | M | M.HpyB130AORF2485P (92% identity) | GAATTC | M.HpyB45ORFC1P |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | adenine-specific DNA methylase | M.HpyB45ORFF1P | |
| ??? | type II restriction endonuclease | |||
| ??? | M | M.HpyKH41ORFVP (47% identity) | M.HpyB45ORFE1P | |
| ??? | M | M.HpyF018ORF6510P (96% identity) | M.HpyB45ORFKP | |
| ??? | R | HpySP04ORF6895P (92% identity) | HpyB45ORFKP | |
| ??? | M | M.Hpy1198ORF2300P (41% identity) | M.HpyB45ORFLP | |
| ??? | R | HpyG020ORF6480P (95% identity) | HpyB45ORFLP | |
| ??? | R | type III restriction enzyme | HpyB45ORFRP | |
| ??? | type IIS restriction-modification protein | |||