Chloracidobacterium thermophilum B |
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Putative Chloracidobacterium thermophilum B RM systems
Ref: Garcia Costas,A.M. et al. unpublished
REBASE ref # 13557
| Sequence length: | GenBank #: | |
| chromosome 1: | 2,683,362 bp | CP002514 |
| chromosome 2: | 1,012,010 bp | CP002515 |
REBASE acronym: CthB
Org_num: 7807
All begin Cabther_A, Cabther_B
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 2 | ||||
| 484 | S | S.TveZ9701ORFCP (36% identity) | S.CthBORF484P | |
| 486 | 538 aa hypothetical protein | |||
| 485 | pseudogene | |||
| 486 | R | CspsAORF11980P (47% identity) | R1.CthBORF487P | |
| 487 | M | M.CthsBORF14365P (100% identity) | M.CthBORF487P | |
| 488 | S | S1.CthsBORF14365P (99% identity) | S.CthBORF487P | |
| 489 | R | CthsBORF14365P (99% identity) | R2.CthBORF487P | |
| 490 | 65 aa hypothetical protein | |||
| 497 | 61 aa hypothetical protein | |||
| 498 | M | M.CthsBORF14405P (95% identity) | M.CthBORF498P | |
| 499 | 91 aa hypothetical protein | |||
| 500 | R | Methyltransferase domain protein | R1.CthBORF498P | |
| 501 | R | 97 aa hypothetical protein | R2.CthBORF498P | |
| 502 | Uncharacterized protein conserved in bacteria | |||
| 505 | DNA modification methylase | |||
| 506 | R | CspsAORF11980P (13% identity) | CthBORF506P | |
| 507 | 40 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 41 | HEAT repeat protein | |||
| 42 | M | M.CthsBORF195P (100% identity) | M.CthBORF42P | |
| 43 | R | CthsBORF195P (100% identity) | CthBORF42P | |
| 44 | 316 aa hypothetical protein | |||
| 192 | Superfamily II DNA and RNA helicase | |||
| 193 | RM | CthsBORF990P (100% identity) | CthBORF193P | |
| 194 | 82 aa hypothetical protein | |||
| 254 | 258 aa hypothetical protein | |||
| 255 | R | CthsBORF1315P (100% identity) | CCTAGG | CthBORF256P |
| 256 | M | M.CthsBORF1315P (94% identity) | CCTAGG | M.CthBORF256P |
| 257 | Uncharacterized conserved protein | |||
| 414 | amino acid/amide ABC transporter ATP-binding | |||
| 415 | M | M.CthsBORF2120P (99% identity) | M.CthBORF415P | |
| 416 | amino acid/amide ABC transporter ATP-binding | |||
| 477 | N-acetylmuramoyl-L-alanine amidase | |||
| ??? | M | M.CthsBORF2440P (100% identity) | M1.CthBORF478P | |
| 478 | M | CthsBORF2440P (65% identity) | M2.CthBORF478P | |
| 479 | DNA mismatch repair protein MutL | |||
| 593 | 270 aa hypothetical protein | |||
| 594 | M | M.CthsBORF3040P (100% identity) | CATG | M.CthBORF594P |
| 595 | Adenine-specific DNA methylase | |||
| 594 | Adenine-specific DNA methylase | |||
| 595 | M | M.CthsBORF3045P (100% identity) | AATT | M.CthBORF595P |
| 596 | CAAX amino terminal protease family | |||
| 744 | protein of unknown function DUF81 | |||
| 745 | RM | CthsBORF3795P (99% identity) | CthBORF745P | |
| 746 | 388 aa hypothetical protein | |||
| 964 | 228 aa hypothetical protein | |||
| 965 | M | M.CthsBORF4880P (100% identity) | M.CthBORF965P | |
| 966 | 527 aa hypothetical protein | |||
| 1012 | 194 aa hypothetical protein | |||
| 1013 | R | CthsBORF5130P (99% identity) | GTMKAC | CthBORF1013P |
| 1014 | 47 aa hypothetical protein | |||
| 1200 | Superfamily II DNA/RNA helicase, SNF2 family | |||
| 1201 | M | M.CthsBORF6085P (100% identity) | M.CthBORF1201P | |
| 1202 | 1108 aa hypothetical protein | |||
| 1768 | Fe-S oxidoreductase | |||
| 1769 | M | M.CthsBORF9190P (100% identity) | TCGCGA | M.CthBORF1769P |
| 1770 | 285 aa hypothetical protein | |||
| 1771 | C | C.CthsBORF9190P (100% identity) | C.CthBORF1769P | |
| 1772 | permease | |||
| 1769 | 255 aa hypothetical protein | |||
| 1770 | R | CthsBORF9190P (100% identity) | TCCGGA | CthBORF1770P |
| 1771 | Helix-turn-helix protein | |||
| 1884 | ABC-type Na+ efflux pump, permease component | |||
| 1885 | M | M.CthsBORF9775P (45% identity) | M.CthBORF1885P | |
| 1886 | R | CthsBORF9775P (100% identity) | CthBORF1885P | |
| 1887 | methylmalonyl-CoA epimerase | |||
| 1935 | nucleotidyltransferase | |||
| 1936 | M | M.CthsBORF10035P (94% identity) | M.CthBORF1936P | |
| 1937 | Superfamily II DNA/RNA helicase, SNF2 family | |||
| 2228 | 76 aa hypothetical protein | |||
| 2229 | M | M.CthsBORF11485P (100% identity) | M.CthBORF2229P | |
| 2230 | GTP-binding protein LepA | |||
| chromosome 2 | ||||
| 38 | ribonucleoside-diphosphate reductase, | |||
| 39 | R | CthsBORF11915P (100% identity) | TTCGAA | CthBORF38P |
| 40 | 35 aa hypothetical protein | |||
| 47 | NH(3)-dependent NAD(+) synthetase | |||
| 48 | R | CthsBORF11955P (100% identity) | RGATCY | CthBORF49P |
| 49 | M | M.CthsBORF11955P (100% identity) | RGATCY | M.CthBORF49P |
| 50 | transposase, IS605 OrfB family, central region | |||
| 51 | Alpha-galactosidase | |||
| 52 | M | M.CthsBORF11970P (98% identity) | GACGTC | M.CthBORF52P |
| 53 | 237 aa hypothetical protein | |||
| 52 | DNA modification methylase | |||
| 53 | R | CthsBORF11985P (100% identity) | GGCC | CthBORF54P |
| 54 | M | M.CthsBORF11985P (48% identity) | GGCC | M.CthBORF54P |
| 55 | 25 aa hypothetical protein | |||
| 55 | 25 aa hypothetical protein | |||
| 56 | M | M.CthsBORF11990P (100% identity) | GACGTC | M.CthBORF56P |
| 57 | R | CthsBORF11990P (100% identity) | GACGTC | CthBORF56P |
| 58 | DNA ligase, NAD-dependent | |||
| 204 | 125 aa hypothetical protein | |||
| 205 | M | M.CthsBORF12925P (100% identity) | M.CthBORF205P | |
| 206 | 218 aa hypothetical protein | |||
| 275 | 154 aa hypothetical protein | |||
| ??? | M | M.CthsBORF13290P (100% identity) | GATC | M.CthBORF276P |
| 278 | transposase, IS605 OrfB family, central region | |||
| 321 | Transposase-like protein | |||
| 322 | M | M.CthsBORF13535P (71% identity) | GGCC | M.CthBORF322P |
| 323 | Periplasmic glycine betaine/choline-binding | |||
| 448 | ABC-type Fe3+-hydroxamate transport system, | |||
| 449 | M | M.Csp4045ORF14880P (75% identity) | CGATCG | M.CthBORF449P |
| 451 | 643 aa hypothetical protein | |||
| 503 | 114 aa hypothetical protein | |||
| 504 | R | CthsBORF14450P (99% identity) | GCCNNNNNGGC | CthBORF505P |
| 505 | M | M.CthsBORF14450P (100% identity) | GCCNNNNNGGC | M.CthBORF505P |
| 506 | 170 aa hypothetical protein | |||
| 514 | 43 aa hypothetical protein | |||
| 515 | M | M.CthsBORF14505P (100% identity) | CAGCTG | M.CthBORF515P |
| 516 | 403 aa hypothetical protein | |||
| 529 | Imidazolonepropionase-like amidohydrolase | |||
| 530 | M | M.CthsBORF14570P (100% identity) | TTAA | M.CthBORF530P |
| 531 | 203 aa hypothetical protein | |||
| 714 | 87 aa hypothetical protein | |||
| 715 | RM | 1061 aa hypothetical protein | CthBORF715P | |
| 716 | Uncharacterized conserved protein | |||
| 730 | Uncharacterized protein conserved in bacteria | |||
| 731 | M | M.CthsBORF15665P (94% identity) | M.CthBORF731P | |
| 732 | R | CthsBORF15665P (100% identity) | CthBORF731P | |
| 733 | Signal transduction histidine kinase | |||
| 824 | 109 aa hypothetical protein | |||
| 825 | R | CthsBORF16105P (74% identity) | GATC | CthBORF826P |
| 826 | M | M.CthsBORF16105P (100% identity) | GATC | M.CthBORF826P |
| 827 | 295 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2133 | Small-conductance mechanosensitive channel | |||
| 2134 | R | CthsBMrrP (100% identity) | CthBMrrP | |
| 2135 | DNA polymerase I | |||