Putative Roseiflexus species RS-1 RM systems
Ref: Copeland,A. et al. unpublished
REBASE ref # 10178
Sequence length: | GenBank #: | |
Chromosome: | 5,827,770 bp | AAQU00000000 (NZ_AAQU00000000) |
Chromosome: | 5,801,598 bp | CP000686 (NC_009523) |
REBASE acronym: RspRS
Org_num: 4799
All begin RoseRS_, RoseRSDRAFT_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1099 | RNA methylase:N-6 DNA | |||
1100 | S | S.Rma4252ORF2893P (34% identity) | S.RspRSORF734P | |
1101 | M | M.Bca13669ORFHP (70% identity) | M.RspRSORF734P | |
1151 | Transposase IS200-like | |||
1152 | 356 aa hypothetical protein | |||
1102 | R | Bca13669ORFHP (70% identity) | RspRSORF734P | |
1103 | Metallophosphoesterase | |||
Chromosome | ||||
278 | pseudogene | |||
??? | S | Restriction modification system DNA specificity domain | S.RspRSORF275P | |
279 | 1271 aa hypothetical protein | |||
280 | Death-on-curing protein | |||
281 | R | Tsp72310ORF11505P (76% identity) | RspRSORF275P | |
282 | 310 aa hypothetical protein | |||
730 | metallophosphoesterase | |||
731 | R | Bca13669ORFHP (70% identity) | RspRSORF734P | |
732 | 356 aa hypothetical protein | |||
733 | transposase IS200-family protein | |||
734 | M | M.Bca13669ORFHP (70% identity) | M.RspRSORF734P | |
735 | S | S.Rma4252ORF2893P (34% identity) | S.RspRSORF734P | |
736 | N-6 DNA methylase | |||
2686 | protein of unknown function DUF45 | |||
2687 | R | CspMSGORFHP (89% identity) | RspRSORF2687P | |
2688 | 239 aa hypothetical protein | |||
2689 | restriction modification system DNA specificity | |||
??? | 934 aa hypothetical protein RoseRS_2690 | |||
2690 | hypothetical protein | |||
2691 | M | M.Tsp78456ORFDP (75% identity) | M.RspRSORF2687P | |
2692 | phosphoribosylamine--glycine ligase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1091 | pantoate--beta-alanine | |||
1092 | M | M.Hri593ORF20840P (85% identity) | M.RspRSORF742P | |
1093 | R | CthsBORF2440P (64% identity) | RspRSORF742P | |
1094 | adenine phosphoribosyltransferase | |||
Chromosome | ||||
123 | TRAP dicarboxylate transporter, DctM subunit | |||
124 | M | M.EsaDix5I (85% identity) | TTAA | M.RspRSORF124P |
125 | R | Tam77409IP (59% identity) | TTAA | RspRSORF124P |
126 | 387 aa hypothetical protein | |||
232 | asparaginyl-tRNA synthetase | |||
233 | M | M.Rca13941ORF884P (91% identity) | GATC | M.RspRSORF233P |
234 | 151 aa hypothetical protein | |||
238 | 129 aa hypothetical protein | |||
239 | M | M.UbaMSORFSP (23% identity) | M.RspRSORF239P | |
240 | R | FchCBS1ORF5160P (59% identity) | RspRSORF239P | |
241 | transposase, IS4 family | |||
298 | helicase domain protein | |||
299 | RM | CspsDORF945P (84% identity) | RspRSORF299P | |
300 | 193 aa hypothetical protein | |||
374 | nuclease (SNase domain protein) | |||
375 | M | M.Rca13941ORF2010P (73% identity) | GANTC | M.RspRSORF375P |
376 | 121 aa hypothetical protein | |||
459 | 363 aa hypothetical protein | |||
460 | RM | Cspisl2ORF15665P (38% identity) | RspRSORF560P | |
461 | helicase domain protein | |||
741 | adenine phosphoribosyltransferase | |||
742 | R | CthsBORF2440P (64% identity) | RspRSORF742P | |
743 | M | M.Hri593ORF20840P (85% identity) | M.RspRSORF742P | |
744 | pantothenate synthetase | |||
952 | GHMP kinase | |||
953 | M | M.Rca13941ORF3593P (77% identity) | CATG | M.RspRSORF953P |
954 | thiamine pyrophosphate enzyme TPP binding domain | |||
1241 | 57 aa hypothetical protein | |||
1242 | R | Rca13941ORF4293P (38% identity) | GTCGAC | RspRSORF1243P |
1243 | M | M.CspYORF900P (73% identity) | GTCGAC | M.RspRSORF1243P |
1244 | 114 aa hypothetical protein | |||
1475 | 359 aa hypothetical protein | |||
1476 | RM | OtrDG6ORF786P (13% identity) | RspRSORF1476AP | |
1477 | transposase, IS4 family | |||
1478 | RM | TteR1ORF1547P (58% identity) | RspRSORF1476BP | |
1479 | helicase domain protein | |||
1881 | tRNA-i(6)A37 thiotransferase enzyme MiaB | |||
1882 | RM | TdaGNS1ORF6650P (36% identity) | RspRSORF1882P | |
1883 | 67 aa hypothetical protein | |||
2182 | 307 aa hypothetical protein | |||
2183 | M | M.Rca13941ORF1293P (72% identity) | GACNNNGTC | M.RspRSORF2183P |
2184 | 294 aa hypothetical protein | |||
2226 | 145 aa hypothetical protein | |||
2227 | M | M.Cspisl2ORF8035P (65% identity) | CTGCAG | M.RspRSORF2227P |
??? | R | O-methyltransferase | CTGCAG | RspRSORF2227P |
2229 | protein kinase | |||
2250 | 536 aa hypothetical protein | |||
2251 | M | M.Sto61278ORF34275P (66% identity) | M.RspRSORF2251P | |
2252 | 212 aa hypothetical protein | |||
2283 | polymorphic outer membrane protein | |||
2284 | M | M.PprC007ORFFP (60% identity) | M.RspRSORF2284P | |
2285 | C4-dicarboxylate transporter/malic acid | |||
2395 | NAD-dependent epimerase/dehydratase | |||
2397 | RM | 792 aa hypothetical protein | RspRSORF2396P | |
2398 | succinate dehydrogenase subunit B | |||
2537 | 51 aa hypothetical protein | |||
2538 | RM | Aba19ORF8745P (33% identity) | RspRSORF2538P | |
2539 | helicase domain protein | |||
2823 | protoporphyrin IX magnesium-chelatase | |||
??? | M | M.Tel542ORF12700P (35% identity) | CYCGRG | M.RspRSORF2824P |
2825 | R | Aba19ORF13025P (18% identity) | CYCGRG | RspRSORF2824P |
2826 | TAP domain protein | |||
3042 | 95 aa hypothetical protein | |||
3043 | M | M.Rca13941ORF2134P (76% identity) | GGCC | M.RspRSORF3042P |
3044 | R | UbaMSORFC14P (75% identity) | GGCC | RspRSORF3042P |
3045 | PilT protein domain protein | |||
3561 | transposase, IS4 family | |||
3562 | M | M.CspYORF2918P (28% identity) | M.RspRSORF3562P | |
3563 | ATPase (AAA+ superfamily)-like protein | |||
3690 | transposase, IS4 family | |||
3691 | M | M.Rca13941ORF958P (49% identity) | ACGCGT | M.RspRSORF3691P |
3692 | sodium ion-translocating decarboxylase, beta | |||
4008 | bacterial nucleoid protein Hbs | |||
4009 | M | M.Rca13941ORF67P (38% identity) | M.RspRSORF4009P | |
4010 | TRAP dicarboxylate transporter- DctP subunit | |||
4065 | Ferrochelatase | |||
4066 | M | M.Cba153FORF7710P (68% identity) | TCGCGA | M.RspRSORF4066P |
??? | R | BpaG30ORF4805P (33% identity) | TCGCGA | RspRSORF4066P |
4067 | efflux transporter, RND family, MFP subunit | |||
4108 | inner-membrane translocator | |||
4109 | M | M.Rca13941ORF1389P (75% identity) | GGCGCC | M.RspRSORF4109P |
4110 | R | Rca13941ORF1389P (62% identity) | GGCGCC | RspRSORF4109P |
4111 | V | V.Rca13941ORF1389P (86% identity) | V.RspRSORF4109P | |
4112 | 3-dehydroquinate synthase | |||
4183 | 271 aa hypothetical protein | |||
4184 | M | M.Rca13941ORF894P (69% identity) | GCCNNNNNGGC | M.RspRSORF4184P |
4185 | 236 aa hypothetical protein | |||
4184 | DNA methylase N-4/N-6 domain protein | |||
4185 | R | CagI (64% identity) | GCCNNNNNGGC | RspRSI |
4186 | sulphate transporter | |||
4283 | prevent-host-death family protein | |||
4284 | M | M.CspYORF3926P (80% identity) | GACGTC | M.RspRSORF4284P |
??? | R | CspMSGORFLP (57% identity) | GACGTC | RspRSORF4284P |
4285 | diphosphomevalonate decarboxylase | |||
4317 | amidohydrolase | |||
4318 | M | DNA methylase N-4/N-6 domain-containing protein | M.RspRSORF4318P | |
4319 | 187 aa hypothetical protein | |||
4512 | iron dependent repressor | |||
4513 | M | M.Rca13941ORF875P (83% identity) | CGWCG | M.RspRSORF4513P |
4514 | transposase, IS111A/IS1328/IS1533 | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1825 | alpha/beta hydrolase fold | |||
1826 | M | M.Rca13941ORF2518P (73% identity) | M.RspRSORF1826P | |
1827 | 124 aa hypothetical protein | |||
2943 | Superfamily I DNA and RNA helicase-like protein | |||
2944 | M | M.Xsp218FORF1460P (62% identity) | M.RspRSORF2944P | |
2946 | R | Rba188ORF4353P (76% identity) | RspRSORF2944P | |
2947 | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
410 | glycosyl transferase, family 39 | |||
411 | R | Psp2401MrrP (29% identity) | RspRSMrrP | |
412 | multi-sensor signal transduction histidine |