Ref: Copeland,A. et al. unpublished

REBASE ref # 10178

Sequence length:GenBank #:
Chromosome: 5,801,598 bp CP000686 (NC_009523)
Chromosome: 5,827,770 bp AAQU00000000 (NZ_AAQU00000000)

REBASE acronym: RspRS

Org_num: 4799

 

All begin RoseRS_, RoseRSDRAFT_

Type I
ORF Gene Most similar Specificity Name
 
Chromosome
 
278 pseudogene
??? S S.TspPSB1ORFVP (0% identity) S.RspRSORF275P
279 1271 aa hypothetical protein
280 Death-on-curing protein
281 R CspYORF1958P (0% identity) RspRSORF275P
282 310 aa hypothetical protein
 
730 metallophosphoesterase
731 R Bca13669ORFHP (0% identity) RspRSORF734P
732 356 aa hypothetical protein
733 transposase IS200-family protein
734 M M.Bca13669ORFHP (0% identity) M.RspRSORF734P
735 S S.Rma4252ORF2893P (0% identity) S.RspRSORF734P
736 N-6 DNA methylase
 
2686 protein of unknown function DUF45
2687 R CspMSGORFHP (0% identity) RspRSORF2687P
2688 239 aa hypothetical protein
2689 restriction modification system DNA specificity
??? 934 aa hypothetical protein RoseRS_2690
2690 hypothetical protein
2691 M M.Cae14535ORF20260P (0% identity) M.RspRSORF2687P
2692 phosphoribosylamine--glycine ligase
 
Chromosome
 
1099 RNA methylase:N-6 DNA
1100 S S.Rma4252ORF2893P (0% identity) S.RspRSORF734P
1101 M M.Bca13669ORFHP (0% identity) M.RspRSORF734P
1151 Transposase IS200-like
1152 356 aa hypothetical protein
1102 R Bca13669ORFHP (0% identity) RspRSORF734P
1103 Metallophosphoesterase
Type II
ORF Gene Most similar Specificity Name
 
Chromosome
 
123 TRAP dicarboxylate transporter, DctM subunit
124 M M.EsaDix5I (0% identity) TTAA M.RspRSORF124P
125 R Tam77409IP (0% identity) TTAA RspRSORF124P
126 387 aa hypothetical protein
 
232 asparaginyl-tRNA synthetase
233 M M.Rca13941ORF884P (0% identity) GATC M.RspRSORF233P
234 151 aa hypothetical protein
 
238 129 aa hypothetical protein
239 M M.Rca13941ORF1608P (0% identity) M.RspRSORF239P
240 R Ial16511ORF1237P (0% identity) RspRSORF239P
241 transposase, IS4 family
 
298 helicase domain protein
299 RM TspNK55ORF10105P (0% identity) RspRSORF299P
300 193 aa hypothetical protein
 
374 nuclease (SNase domain protein)
375 M M.Rca13941ORF2010P (0% identity) GANTC M.RspRSORF375P
376 121 aa hypothetical protein
 
459 363 aa hypothetical protein
460 RM Cspisl2ORF15665P (0% identity) RspRSORF560P
461 helicase domain protein
 
741 adenine phosphoribosyltransferase
742 R Hri593ORF20840P (0% identity) RspRSORF742P
743 M M.Hri593ORF20840P (0% identity) M.RspRSORF742P
744 pantothenate synthetase
 
952 GHMP kinase
953 M M.Rca13941ORF3593P (0% identity) CATG M.RspRSORF953P
954 thiamine pyrophosphate enzyme TPP binding domain
 
1241 57 aa hypothetical protein
1242 R Rca13941ORF4293P (0% identity) GTCGAC RspRSORF1243P
1243 M M.CspYORF900P (0% identity) GTCGAC M.RspRSORF1243P
1244 114 aa hypothetical protein
 
1475 359 aa hypothetical protein
1476 RM OtrDG6ORF786P (0% identity) RspRSORF1476AP
1477 transposase, IS4 family
1478 RM TteR1ORF1547P (0% identity) RspRSORF1476BP
1479 helicase domain protein
 
1881 tRNA-i(6)A37 thiotransferase enzyme MiaB
1882 RM TdaGNS1ORF6650P (0% identity) RspRSORF1882P
1883 67 aa hypothetical protein
 
2182 307 aa hypothetical protein
2183 M M.Rca13941ORF1293P (0% identity) GACNNNGTC M.RspRSORF2183P
2184 294 aa hypothetical protein
 
2226 145 aa hypothetical protein
2227 M M.Cspisl2ORF8035P (0% identity) CTGCAG M.RspRSORF2227P
??? R Cspisl2ORF8035P (0% identity) CTGCAG RspRSORF2227P
2229 protein kinase
 
2250 536 aa hypothetical protein
2251 M M.Sto61278ORF34275P (0% identity) M.RspRSORF2251P
2252 212 aa hypothetical protein
 
2283 polymorphic outer membrane protein
2284 M M.Rca13941ORF4397P (0% identity) M.RspRSORF2284P
2285 C4-dicarboxylate transporter/malic acid
 
2395 NAD-dependent epimerase/dehydratase
2397 RM Rca13941ORF3082P (0% identity) RspRSORF2396P
2398 succinate dehydrogenase subunit B
 
2537 51 aa hypothetical protein
2538 RM CspMSGORFFP (0% identity) RspRSORF2538P
2539 helicase domain protein
 
2823 protoporphyrin IX magnesium-chelatase
??? M M.Rca13941ORF407P (0% identity) CYCGRG M.RspRSORF2824P
2825 R Rca13941ORF407P (0% identity) CYCGRG RspRSORF2824P
2826 TAP domain protein
 
3042 95 aa hypothetical protein
3043 M M.Rca13941ORF2134P (0% identity) GGCC M.RspRSORF3042P
3044 R UbaMSORFC14P (0% identity) GGCC RspRSORF3042P
3045 PilT protein domain protein
 
3561 transposase, IS4 family
3562 M M.CspMSGORFRP (0% identity) M.RspRSORF3562P
3563 ATPase (AAA+ superfamily)-like protein
 
3690 transposase, IS4 family
3691 M M.Rca13941ORF958P (0% identity) ACGCGT M.RspRSORF3691P
3692 sodium ion-translocating decarboxylase, beta
 
4008 bacterial nucleoid protein Hbs
4009 M M.Rca13941ORF67P (0% identity) M.RspRSORF4009P
4010 TRAP dicarboxylate transporter- DctP subunit
 
4065 Ferrochelatase
4066 M M.PamM71ORF4865P (0% identity) TCGCGA M.RspRSORF4066P
??? R BceD12ORF4452P (0% identity) TCGCGA RspRSORF4066P
4067 efflux transporter, RND family, MFP subunit
 
4108 inner-membrane translocator
4109 M M.Rca13941ORF1389P (0% identity) GGCGCC M.RspRSORF4109P
4110 R Rca13941ORF1389P (0% identity) GGCGCC RspRSORF4109P
4111 V V.Rca13941ORF1389P (0% identity) V.RspRSORF4109P
4112 3-dehydroquinate synthase
 
4183 271 aa hypothetical protein
4184 M M.Rca13941ORF894P (0% identity) GCCNNNNNGGC M.RspRSORF4184P
4185 236 aa hypothetical protein
 
4184 DNA methylase N-4/N-6 domain protein
4185 R CagI (0% identity) GCCNNNNNGGC RspRSI
4186 sulphate transporter
 
4283 prevent-host-death family protein
4284 M M.CspYORF3926P (0% identity) GACGTC M.RspRSORF4284P
??? R CthBORF56P (0% identity) GACGTC RspRSORF4284P
4285 diphosphomevalonate decarboxylase
 
4317 amidohydrolase
4318 M M.Rca13941ORF4183P (0% identity) M.RspRSORF4318P
4319 187 aa hypothetical protein
 
4512 iron dependent repressor
4513 M M.Rca13941ORF875P (0% identity) CGWCG M.RspRSORF4513P
4514 transposase, IS111A/IS1328/IS1533
Type III
ORF Gene Most similar Specificity Name
 
Chromosome
 
1825 alpha/beta hydrolase fold
1826 M M.Rca13941ORF2518P (0% identity) M.RspRSORF1826P
1827 124 aa hypothetical protein
 
2943 Superfamily I DNA and RNA helicase-like protein
2944 M M.Xsp218FORF1460P (0% identity) M.RspRSORF2944P
2946 R BspG22ORF2676P (0% identity) RspRSORF2944P
2947 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase
Type IV
ORF Gene Most similar Specificity Name
 
Chromosome
 
410 glycosyl transferase, family 39
411 R LsaKIBI1MrrP (0% identity) RspRSMrrP
412 multi-sensor signal transduction histidine