Lactobacillus johnsonii pf01 |
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Putative Lactobacillus johnsonii pf01 RM systems
Ref: Lee,J.H. et al. unpublished
REBASE ref # 13367
| Sequence length: | GenBank #: | |
| Chromosome: | (contig set) | AFQJ00000000 |
| Chromosome: | 1,933,261 bp | CP024781 |
| plasmid pLJPF01S: | 13,905 bp | CP024783 |
REBASE acronym: Ljopf01
Org_num: 7503
All begin PF01_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 753 | 327 aa hypothetical protein | |||
| 754 | S | S2.Ljo9203ORF1060P (50% identity) | CAGNNNNNGCT | S1.Ljopf01II |
| 755 | integrase | |||
| 756 | S | S2.LgaK7ORF6265P (53% identity) | S2.Ljopf01IIP | |
| 757 | M | M.Ljo9203ORF1060P (99% identity) | CAGNNNNNGCT | M.Ljopf01II |
| 758 | R | Ljo9203ORF1060P (99% identity) | CAGNNNNNGCT | Ljopf01IIP |
| 759 | 305 aa hypothetical protein | |||
| Chromosome | ||||
| ??? | S | S2.LgaK7ORF6265P (53% identity) | S2.Ljopf01IIP | |
| ??? | S | S2.Ljo9203ORF1060P (50% identity) | CAGNNNNNGCT | S1.Ljopf01II |
| ??? | M | M.Ljo9203ORF1060P (99% identity) | CAGNNNNNGCT | M.Ljopf01II |
| ??? | R | Ljo9203ORF1060P (99% identity) | CAGNNNNNGCT | Ljopf01IIP |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1844 | replication-associated protein RepC | |||
| 1845 | R | R2.Ljopf01ORFBP (59% identity) | GGATG | Ljopf01IP |
| 1846 | M | M.Ljopf01ORFBP (26% identity) | GGATG | M1.Ljopf01I |
| plasmid pLJPF01S | ||||
| ??? | M | M2.Ljopf01I (72% identity) | M.Ljopf01ORFBP | |
| ??? | R | Ljopf01IP (37% identity) | R1.Ljopf01ORFBP | |
| ??? | R | Ljopf01IP (59% identity) | R2.Ljopf01ORFBP | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 746 | 47 aa hypothetical protein | |||
| 747 | R | Ljo9203MrrP (98% identity) | Ljopf01MrrP | |
| 748 | 42 aa hypothetical protein | |||
| 1542 | exodeoxyribonuclease III | |||
| 1543 | R | Ljopf01ORFAP (99% identity) | Ljopf01ORF1543P | |
| 1544 | cell surface hydrolase | |||
| Chromosome | ||||
| ??? | R | Ljopf01ORF1543P (99% identity) | Ljopf01ORFAP | |
| ??? | R | Ljo9203MrrP (98% identity) | Ljopf01MrrP | |