Acidithiobacillus ferrivorans SS3 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Acidithiobacillus ferrivorans SS3 RM systems
Ref: Lucas,S. et al. unpublished
REBASE ref # 13214
| Sequence length: | GenBank #: | |
| Chromosome: | 3,152,659 bp | AFJD00000000 (NZ_AFJD00000000) |
| Chromosome: | 3,207,552 bp | CP002985 (NC_015942) |
REBASE acronym: AfeSS3
Org_num: 7657
All begin Acife_, AcifeDRAFT_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 508 | SMP-30/Gluconolaconase/LRE-like | |||
| 509 | M | M.Afe6S08ORF12365P (99% identity) | M.AfeSS3ORF668P | |
| 510 | S | S2.Afe6S08ORF12365P (63% identity) | S.AfeSS3ORF668P | |
| 511 | 492 aa hypothetical protein | |||
| 512 | 319 aa hypothetical protein | |||
| 513 | 53 aa hypothetical protein | |||
| 514 | 73 aa hypothetical protein | |||
| 515 | filamentation induced by cAMP protein Fic | |||
| 516 | R | Afe6S08ORF12365P (99% identity) | AfeSS3ORF668P | |
| 517 | 111 aa hypothetical protein | |||
| 174 | 356 aa hypothetical protein | |||
| 175 | S | S.LspSJ36ORF445P (50% identity) | S.AfeSS3ORF165P | |
| 176 | 245 aa hypothetical protein | |||
| Chromosome | ||||
| 160 | protein of unknown function DUF45 | |||
| 161 | R | LspSJ36ORF445P (90% identity) | AfeSS3ORF165P | |
| 162 | 245 aa hypothetical protein | |||
| 163 | S | S.LspSJ36ORF445P (50% identity) | S.AfeSS3ORF165P | |
| 164 | 356 aa hypothetical protein | |||
| 165 | M | M.TpaARh1ORF1910P (91% identity) | M.AfeSS3ORF165P | |
| 166 | 193 aa hypothetical protein | |||
| 300 | single-strand binding protein | |||
| 301 | M | M.Afe6S08ORF13725P (92% identity) | M.AfeSS3ORF301P | |
| 302 | S | S.Cph266ORF1712P (46% identity) | S.AfeSS3ORF301P | |
| 303 | 202 aa hypothetical protein | |||
| 304 | 202 aa hypothetical protein | |||
| 305 | Domain of unknown function DUF1814 | |||
| 306 | R | TspFBIIIP (84% identity) | AfeSS3ORF301P | |
| 307 | 62 aa hypothetical protein | |||
| 667 | SMP-30/Gluconolaconase/LRE-like | |||
| 668 | M | M.Afe6S08ORF12365P (99% identity) | M.AfeSS3ORF668P | |
| 669 | S | S2.Afe6S08ORF12365P (63% identity) | S.AfeSS3ORF668P | |
| 670 | 492 aa hypothetical protein | |||
| 671 | 319 aa hypothetical protein | |||
| 672 | 53 aa hypothetical protein | |||
| 673 | 73 aa hypothetical protein | |||
| 674 | filamentation induced by cAMP protein Fic | |||
| 675 | R | Afe6S08ORF12365P (99% identity) | AfeSS3ORF668P | |
| 676 | 111 aa hypothetical protein | |||
| 831 | 557 aa hypothetical protein | |||
| 832 | M | M.AthLicORFMP (85% identity) | M.AfeSS3ORF832P | |
| 833 | 270 aa hypothetical protein | |||
| 834 | SMC domain-containing protein | |||
| 835 | S | S.PspAK6UORFGP (80% identity) | S.AfeSS3ORF832P | |
| 836 | addiction module antidote protein, CC2985 | |||
| 837 | plasmid stabilization system | |||
| 838 | R | AspJHL3IIIP (88% identity) | AfeSS3ORF832P | |
| 839 | transcriptional regulator | |||
| 2251 | 390 aa hypothetical protein | |||
| 2252 | M | M.Dspc12ORF19055P (59% identity) | M.AfeSS3ORF2252P | |
| 2253 | S | S.AavSa2ORF960P (45% identity) | S.AfeSS3ORF2252P | |
| 2254 | protein of unknown function DUF891 | |||
| 2255 | 104 aa hypothetical protein | |||
| 2256 | stability protein StbD, putative | |||
| 2257 | addiction module toxin, RelE/StbE family | |||
| 2258 | R | NwaD1FHSORF18385P (65% identity) | AfeSS3ORF2252P | |
| 2259 | protein of unknown function DUF45 | |||
| 2403 | hypothetical protein | |||
| 2404 | R | Afe6S08ORF4395P (98% identity) | AfeSS3ORF2404P | |
| 2405 | hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 369 | 137 aa hypothetical protein | |||
| 370 | RM | SmaR01ORF3610P (53% identity) | AfeSS3ORF370P | |
| 371 | 143 aa hypothetical protein | |||
| 880 | 287 aa hypothetical protein | |||
| 881 | RM | AspAMDIV (87% identity) | AfeSS3ORF881P | |
| 882 | protein of unknown function DUF1016 | |||
| 2370 | 1179 aa hypothetical protein | |||
| 2371 | RM | AfeBYMORF5020AP (83% identity) | AfeSS3ORF2371AP | |
| 2372 | transcriptional regulator | |||
| 2373 | RM | Sam16289ORF1031210P (31% identity) | AfeSS3ORF2371BP | |
| 2374 | SMC domain protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 524 | 261 aa hypothetical protein | |||
| 525 | M | M.PaeLo4ORF8025P (85% identity) | M.AfeSS3ORF525P | |
| 526 | pseudogene | |||
| 527 | R | PaeTJM4ORFAP (88% identity) | AfeSS3ORF525P | |
| 528 | 77 aa hypothetical protein | |||
| 1805 | Phosphomethylpyrimidine synthase | |||
| 1806 | R | Afe5721ORF10987P (78% identity) | AfeSS3ORF1809P | |
| 1807 | protein of unknown function DUF86 | |||
| 1808 | DNA polymerase beta domain protein region | |||
| 1809 | M | adenine specific DNA methylase Mod | M.AfeSS3ORF1809P | |
| 1810 | KilA, /APSES-type HTH DNA-binding | |||
| 1947 | 374 aa hypothetical protein | |||
| 1948 | R | AfeBYMORF10675P (92% identity) | AfeSS3ORF1949P | |
| 1949 | M | M.AfeSS3ORF1948P (100% identity) | M.AfeSS3ORF1949P | |
| 1950 | 372 aa hypothetical protein | |||
| 1948 | type III restriction protein res subunit | |||
| 1949 | M | M.AfeSS3ORF1949P (100% identity) | M.AfeSS3ORF1948P | |
| 1950 | 372 aa hypothetical protein | |||
| 2180 | 357 aa hypothetical protein | |||
| 2181 | M | M.Afe5721ORF11251P (97% identity) | M.AfeSS3ORF2181P | |
| 2182 | DNA-damage-inducible protein D | |||
| 2183 | addiction module component CHP02574 | |||
| 2184 | R | Afe5721ORF11251P (95% identity) | AfeSS3ORF2181P | |
| 2185 | protein-export membrane protein SecF | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2249 | 41 aa hypothetical protein | |||
| 2250 | R | Psp1811MrrP (50% identity) | AfeSS3MrrP | |
| 2251 | 390 aa hypothetical protein | |||