Clostridium thermocellum ATCC 27405 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Clostridium thermocellum ATCC 27405 RM systems
Ref: Copeland,A. et al. unpublished
REBASE ref # 9986
Complete sequence: 3,843,301 bp
GenBank #: CP000568 (NC_009012)
REBASE acronym: Cth
Org_num: 1081
All begin Cthe_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1143 | 351 aa hypothetical protein | |||
| 1144 | S | S.TspITDORF2163P (64% identity) | CNCANNNNNNTTC | S.CthIV |
| 1145 | M | M.TthTG57ORF2112P (98% identity) | CNCANNNNNNTTC | M.CthIV |
| 1146 | 120 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1510 | short-chain dehydrogenase/reductase SDR | |||
| 1511 | M | M.Cth20ORF2872P (100% identity) | M.CthORF1511P | |
| 1512 | Type II site-specific deoxyribonuclease | |||
| 1511 | DNA methylase N-4/N-6 domain protein | |||
| 1512 | R | Cth20ORF2874P (100% identity) | GATC | CthORF1513P |
| 1513 | M | M2.RthAD2ORF2306P (100% identity) | GATC | M.CthORF1513P |
| 1514 | protein of unknown function DUF125 | |||
| 1637 | 230 aa hypothetical protein | |||
| 1638 | M | M1.Cst9219ORF9720P (99% identity) | M1.CthORF1638P | |
| 1639 | M | M1.Csp2TORFGP (99% identity) | M2.CthORF1638P | |
| 1640 | 183 aa hypothetical protein | |||
| 1727 | amidoligase enzyme | |||
| 1728 | M | M1.Cth7309ORF10790P (91% identity) | M1.CthORF1728P | |
| 1729 | M | M2.Cth7309ORF10790P (98% identity) | M2.CthORF1728P | |
| 1730 | 141 aa hypothetical protein | |||
| 1746 | 262 aa hypothetical protein | |||
| 1747 | V | V.Fme5667ORF10065P (100% identity) | V.CthORF1749P | |
| 3369 | 135 aa hypothetical protein | |||
| 1748 | R | Fme5667ORF10065P (100% identity) | GCWGC | CthORF1749P |
| 1749 | DNA-cytosine methyltransferase | |||
| 1748 | Restriction endonuclease, type II, AlwI | |||
| 1749 | M | M.Fme5667ORF10065P (90% identity) | GCWGC | M.CthV |
| 1750 | 69 aa hypothetical protein | |||
| 3394 | 65 aa hypothetical protein | |||
| ??? | R | BhaII (75% identity) | GGCC | CthORF2320P |
| 2320 | DNA-cytosine methyltransferase | |||
| ??? | HaeIII restriction endonuclease | |||
| 2320 | M | M.Eba213ORF3267P (58% identity) | GGCC | M.CthVI |
| 2321 | 171 aa hypothetical protein | |||
| 3400 | 80 aa hypothetical protein | |||
| 2470 | M | M.SscSp3ORF920012P (71% identity) | GATC | M.CthORF2470P |
| 2471 | R | DfeGSS09ORF3450P (73% identity) | GATC | CthORF2470P |
| 2472 | 281 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 517 | 122 aa hypothetical protein | |||
| 518 | R | Ccl19732ORF1913P (95% identity) | GTCAT | CthIIIP |
| 519 | M | M.NhaLW7ORF17122P (49% identity) | GTCAT | M.CthIII |
| 520 | 241 aa hypothetical protein | |||