Sphingomonas species MM-1 |
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Putative Sphingomonas species MM-1 RM systems
Ref: Tabata,M. et al. Biosci. Biotechnol. Biochem. 75 (3), 466-472 (2011)
REBASE ref # 16007
| Sequence length: | GenBank #: | |
| Chromosome: | 4,054,833 bp | CP004036 |
| plasmid pISP0: | 275,840 bp | CP004037 |
| plasmid pISP1: | 172,140 bp | CP004038 |
REBASE acronym: SspMM1
Org_num: 10266
All begin G432_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8500 | 98 aa hypothetical protein | |||
| 8505 | M | M.Pae27432ORF32235P (95% identity) | M.SspMM1ORF8505P | |
| 8510 | S | S.XorCIATORF17110P (57% identity) | S.SspMM1ORF8505P | |
| 8515 | 248 aa hypothetical protein | |||
| 8520 | R | PmeDMF5ORF6620P (96% identity) | SspMM1ORF8505P | |
| 8525 | virulence protein-like protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3235 | dihydropteroate synthase | |||
| 3240 | M | M.SspKC8ORFBP (92% identity) | GANTC | M.SspMM1ORF3240P |
| 3245 | ribonuclease H | |||
| 5020 | 196 aa hypothetical protein | |||
| 5025 | M | M.SspJJA5ORF595P (50% identity) | YGGCCR | M.SspMM1ORF5025P |
| 5030 | 114 aa hypothetical protein | |||
| 5090 | 168 aa hypothetical protein | |||
| 5095 | M | M.SspC82ORFGP (72% identity) | GATC | M.SspMM1ORF5095P |
| 5100 | 231 aa hypothetical protein | |||
| 7780 | 89 aa hypothetical protein | |||
| 7785 | RM | SspS559ORFCP (68% identity) | SspMM1ORF7785P | |
| 7790 | 229 aa hypothetical protein | |||
| 18400 | 139 aa hypothetical protein | |||
| 18405 | C | C.AavQH1ORF1005P (40% identity) | C.SspMM1ORF18420P | |
| 18410 | R | R1.PaeLYT4ORFEP (79% identity) | GAAGAC | R1.SspMM1ORF18420P |
| 18415 | R | R2.PaeLYT4ORFEP (63% identity) | GAAGAC | R2.SspMM1ORF18420P |
| 18420 | M | M2.Asp75105ORF3185P (75% identity) | GAAGAC | M1.SspMM1ORF18420P |
| 18425 | M | M2.PaeLYT4ORFEP (56% identity) | GAAGAC | M2.SspMM1ORF18420P |
| 18430 | type I restriction/modification system DNA | |||
| plasmid pISP0 | ||||
| 20345 | helicase-like protein | |||
| 20350 | RM | SgrE30ORF11425P (71% identity) | SspMM1ORF20350P | |
| 20355 | restriction endonuclease | |||
| 20350 | type II DNA modification enzyme | |||
| 20355 | R | NarDORF358P (68% identity) | SspMM1ORF20355P | |
| 20360 | UV protection protein | |||
| plasmid pISP1 | ||||
| 20780 | 89 aa hypothetical protein | |||
| ??? | M | site-specific DNA methyltransferase | M.SspMM1ORFAP | |
| 20785 | CopG family transcriptional regulator | |||