Verminephrobacter eiseniae EF01-2 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Verminephrobacter eiseniae EF01-2 RM systems
Ref: Copeland,A. et al. unpublished
REBASE ref # 9922
Complete sequence: 5,566,749 bp
GenBank #: CP000542 (NC_008786)
REBASE acronym: Vei
Org_num: 4667
All begin Veis_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1014 | UBA/THIF-type NAD/FAD binding protein | |||
| 1015 | S | S.Dsp3050ORF7015P (57% identity) | S.VeiORF1016P | |
| 1016 | M | M.AspP4ORF12190P (81% identity) | M.VeiORF1016P | |
| 1017 | 115 aa hypothetical protein | |||
| 1018 | R | type III restriction enzyme, res subunit | VeiORF1016P | |
| 1019 | exonuclease, RdgC | |||
| 1564 | 113 aa hypothetical protein | |||
| 1565 | M | M.RmaB10ORF14900P (75% identity) | M.VeiORF1565P | |
| 1566 | S | S.DgeDORF3108P (47% identity) | S.VeiORF1565P | |
| 1567 | DNA-binding protein | |||
| 1568 | R | Psp2021ORF27490P (90% identity) | VeiORF1565P | |
| 1569 | protein of unknown function DUF45 | |||
| 2420 | 165 aa hypothetical protein | |||
| 2421 | M | M.LhoZ1III (87% identity) | M.VeiORF2421P | |
| 2422 | 334 aa conserved hypothetical protein | |||
| 2423 | S | S.MspP4B1ORF11705P (49% identity) | S.VeiORF2421P | |
| 2424 | R | AspMRS7ORFIP (88% identity) | VeiORF2421P | |
| 2425 | major facilitator superfamily MFS_1 | |||
| 3005 | short-chain dehydrogenase/reductase SDR | |||
| 3006 | M | M.MspTWE2ORF180P (82% identity) | M.VeiORF3006P | |
| 3007 | nucleotidyltransferase substrate binding | |||
| 3008 | 77 aa hypothetical protein | |||
| 3009 | nucleotidyltransferase substrate binding | |||
| 3010 | S | S.Ksa22ORF20690P (43% identity) | S.VeiORF3006P | |
| 3011 | 230 aa conserved hypothetical protein | |||
| 3012 | 331 aa conserved hypothetical protein | |||
| 3013 | R | GcaESORF1218P (81% identity) | VeiORF3006P | |
| 3014 | ABC transporter related | |||
| 3127 | 112 aa conserved hypothetical protein | |||
| 3128 | M | M.Pme10898I (72% identity) | M.VeiORF3128P | |
| 3129 | S | S.PaePALA22ORF6421P (53% identity) | S.VeiORF3128P | |
| 3130 | 248 aa conserved hypothetical protein | |||
| 3131 | R | AxyDDA01ORF20040P (92% identity) | VeiORF3128P | |
| 3132 | 147 aa hypothetical protein | |||
| 3545 | Uncharacterized protein UPF0065 | |||
| 3546 | M | M.Nspsh817ORF2795P (80% identity) | M.VeiORF3546P | |
| 3547 | 349 aa hypothetical protein | |||
| 3548 | 72 aa conserved hypothetical protein | |||
| ??? | S | S.MmoSPMXORF660P (44% identity) | S.VeiORF3546P | |
| 3551 | 163 aa conserved hypothetical protein | |||
| 3552 | protein of unknown function DUF955 | |||
| 3553 | R | Pda11617ORF1465P (67% identity) | VeiORF3546P | |
| 3554 | 313 aa conserved hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 522 | Uncharacterized protein UPF0065 | |||
| 523 | M | 148 aa hypothetical protein | CTCGAG | M.VeiORF523P |
| 524 | R | Type II site-specific deoxyribonuclease | CTCGAG | VeiORF523P |
| 525 | transcriptional regulator, LacI family | |||
| 625 | FAD linked oxidase domain protein | |||
| 626 | R | SacSBORF2042P (76% identity) | CAGCTG | VeiORF627P |
| 627 | M | M.PspSCADCORF209235P (81% identity) | CAGCTG | M.VeiORF627P |
| 628 | transport-associated | |||
| 1174 | phage transcriptional regulator, AlpA | |||
| 1175 | M | M.Asp1281ORF18395P (89% identity) | GTCGAC | M.VeiORF1175P |
| 1176 | V | V.PaeKRP1ORF23070P (76% identity) | V.VeiORF1175P | |
| 1177 | helicase domain protein | |||
| 1178 | 673 aa conserved hypothetical protein | |||
| 1179 | RM | Fli76ORF4555P (82% identity) | VeiORF1179P | |
| 1180 | 466 aa hypothetical protein | |||
| 1181 | RNA-directed DNA polymerase | |||
| 1182 | R | PaeCH14ORF25230P (88% identity) | GTCGAC | VeiORF1182P |
| 1183 | protein of unknown function DUF1016 | |||
| 1307 | D-3-phosphoglycerate dehydrogenase | |||
| 1308 | RM | DspY1ORF12620P (69% identity) | VeiORF1308P | |
| 1309 | FAD linked oxidase domain protein | |||
| 1747 | ketol-acid reductoisomerase | |||
| 1748 | RM | Cth418ORF18615P (74% identity) | VeiORF1748P | |
| 1749 | DNA-binding protein | |||
| 1946 | 100 aa hypothetical protein | |||
| 1947 | R | PaeLXZ1ORFBP (82% identity) | AGGCCT | VeiORF1948P |
| 1948 | M | M.CpiND17ORF19365P (79% identity) | AGGCCT | M.VeiORF1948P |
| 1949 | 1466 aa conserved hypothetical protein | |||
| 3516 | 174 aa hypothetical protein | |||
| 3517 | R | Sen7300IIP (52% identity) | CAGCTG | VeiORF3519P |
| 3518 | C | C.Sen58540ORF20985P (78% identity) | C.VeiORF3519P | |
| 3519 | M | M.EcoFu019ORF3620P (78% identity) | CAGCTG | M.VeiORF3519P |
| 3520 | 258 aa hypothetical protein | |||
| 3653 | 171 aa hypothetical protein | |||
| 3654 | M | M.Cse26136ORF8490P (55% identity) | M.VeiORF3654P | |
| 3655 | phage Gp37Gp68 family protein | |||
| 3719 | 79 aa hypothetical protein | |||
| 3720 | M | DNA modification methylase-like protein | M.VeiORF3720P | |
| 3721 | 129 aa conserved hypothetical protein | |||
| 3754 | 183 aa hypothetical protein | |||
| 3755 | M | M.Cva14ORF19095P (55% identity) | TGGCCA | M.VeiORF3755P |
| 3756 | 103 aa hypothetical protein | |||
| 3757 | phosphoadenosine phosphosulfate reductase | |||
| 3758 | M | M.Mpu984ORF9635P (61% identity) | TGGCCA | M.VeiORF3758P |
| 3759 | superfamily I DNA and RNA helicases-like | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3484 | transcriptional regulator, LysR family | |||
| 3485 | R | Ksp4BL05ORF7240P (70% identity) | VeiORF3485P | |
| 3486 | ATPase-like protein | |||
| 4167 | filamentation induced by cAMP protein Fic | |||
| 4168 | R | BspBE12ORFCP (78% identity) | VeiORF4172P | |
| 4169 | 67 aa hypothetical protein | |||
| 4170 | 399 aa conserved hypothetical protein | |||
| 4171 | 196 aa conserved hypothetical protein | |||
| 4172 | M | M.BspBE12ORFCP (68% identity) | M.VeiORF4172P | |
| 4173 | SMC domain protein | |||