Ref: Bentley,S.D. et al. PLoS Genet. 3 (2), E23 (2007) In press

REBASE ref # 9934

Complete sequence: 2,194,961 bp

GenBank #: AM421808 (NC_008767)

REBASE acronym: Nme18

Org_num: 4407

 

All begin NMC

Type II
ORF Gene Most similar Specificity Name
 
59 transcriptional accessory protein
60 M M1.NmeMC58ORF76P (100% identity) GGTGA M1.Nme18ORF340P
61 M M2.NmeMC58ORF76P (98% identity) M2.Nme18ORF340P
62 truncated UDP-glucose 4-epimerase (psedogene)
 
60 DNA modification methylase
61 M M2.NmeMC58ORF76P (98% identity) GGTGA M.Nme18ORF61P
62 truncated UDP-glucose 4-epimerase (psedogene)
 
294 inner membrane protein
295 M DNA methylase CCTTC M.Nme18IV
296 R Nme8554ORF2231P (100% identity) CCTTC Nme18IVP
298 123 aa hypothetical protein
 
326 leucyl-tRNA synthetase
327 M DNA adenine methylase GATC M1.Nme18ORF327P
328 M Modification methylase DpnIIB GATC M2.Nme18ORF327P
329 184 aa hypothetical protein
 
676 phenylalanyl-tRNA synthetase alpha
678 V NmeDIP very-short-patch-repair RCCGGY V.Nme18VIP
679 M M.NmeS4ORFGP (90% identity) RCCGGY M.Nme18VI
680 R NmeS4ORFGP (100% identity) RCCGGY Nme18VIP
681 phenylalanyl-tRNA synthetase beta
 
769 DP-heptose synthetase
771 M modification methylase CCAGA M.Nme18III
772 R type II restriction endonuclease CCAGA Nme18IIIP
773 ADP-L-glycero-D-mannoheptose epimerase
 
1179 3-isopropylmalate dehydratase small
1180 M DNA modification methylase GGNNCC M.Nme18ORF1180P
1181 R type II restriction endonuclease (pseudogene) GGNNCC Nme18ORF1180P
1182 3-isopropylmalate dehydrogenase
 
1518 alanyl-tRNA synthetase
1519 R 340 aa hypothetical protein GCGCGC Nme18VP
1520 M C-5 cytosine-specific DNA methylase GCGCGC M.Nme18V
1521 transposase for IS1106A3
 
1987 DNA helicase
1990 V patch repair protein CCGG V.Nme18IIP
1991 R 560 aa conserved hypothetical protein CCGG Nme18IIP
1992 M modification methylase (cytosine-specific DNA CCGG M.Nme18II
1993 insertion element IS1655 transposase
Type III
ORF Gene Most similar Specificity Name
 
1192 319 aa hypothetical protein
1193 R type III restriction-modification Nme18ORF1194P
1194 M M.Nme14159ORF5225P (97% identity) M.Nme18ORF1194P
1195 peptidyl-prolyl cis-trans isomerase A
 
1309 tRNA pseudouridine synthase B
1310 M M.NgoFA19ORF379P (96% identity) ACACC M.Nme18I
1311 R type III restriction/modification ACACC Nme18IP
1312 L-lactate dehydrogenase