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Putative Helicobacter pylori J99 RM systems
Ref: Alm,R.A. et al. Nature 397 (6715), 176-180 (1999)
REBASE ref # 5649
Complete sequence: 1,643,831 bp
GenBank #: AE001439 (NC_000921)
REBASE acronym: Hpy99
Org_num: 1531
All begin jhp_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
413 | polyphosphate kinase | |||
414 | S | S.HpyU428ORF2165P (100% identity) | CCANNNNNNTTT | S.Hpy99XX |
415 | M | M.HpyU428ORF2165P (100% identity) | CCANNNNNNTTT | M.Hpy99XX |
416 | R | HpyJ99bORF4675P (78% identity) | CCANNNNNNTTT | Hpy99XXP |
417 | putative | |||
725 | Outer membrane protein | |||
726 | S | S.HpyS300ORF7330P (100% identity) | AAGNNNNNNCTC | S.Hpy99XVII |
727 | HEAVY-METAL CATION-TRANSPORTING P-TYPE | |||
783 | HYDROXYETHYLTHIAZOLE KINASE | |||
784 | R | HpyS300ORF7640P (86% identity) | RTAYNNNNNRTAY | Hpy99XVI |
785 | S | S.HpyS300ORF7640P (49% identity) | RTAYNNNNNRTAY | S.Hpy99XVI |
786 | M | M.HpyS300ORF7640P (99% identity) | RTAYNNNNNRTAY | M.Hpy99XVI |
787 | putative | |||
1421 | putative | |||
1422 | S | S.HpyJ99aORF4490P (98% identity) | CTTTANNNNNNCTT | S.Hpy99XV |
1423 | M | M.HpyS300ORF3070P (100% identity) | AAGNNNNNCTT | M.Hpy99XV |
1424 | R | HpyS300ORF3070P (99% identity) | CTTTANNNNNNCTT | Hpy99XVP |
1425 | putative | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
42 | putative | |||
43 | M | M1.HpyS300XI (100% identity) | CCTC | M1.Hpy99V |
44 | M | M2.HpyS300XIIP (100% identity) | CCTC | M2.Hpy99VP |
45 | TYPE II DNA MODIFICATION ENZYME | |||
44 | TYPE II DNA MODIFICATION ENZYME | |||
45 | M | M.HpyS300ORF3730P (100% identity) | GTSAC | M.Hpy99II |
46 | R | HpyU428IXP (100% identity) | GTSAC | Hpy99II |
47 | sodium/proline symporter | |||
83 | MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE | |||
84 | R | HpyS300VIP (100% identity) | GATC | Hpy99VIP |
85 | M | M.HpyS300VI (100% identity) | GATC | M.Hpy99VI |
86 | ALPHA(1,2)FUCOSYLTRANSFERASE | |||
163 | ELONGATION FACTOR P (EF-P) | |||
164 | R | R1.HpyS300ORF4375P (100% identity) | R1.Hpy99ORF165P | |
165 | R | R2.HpyU428ORF885P (100% identity) | R2.Hpy99ORF165P | |
166 | sialic acid synthase | |||
243 | EXODEOXYRIBONUCLEASE LARGE SUBUNIT | |||
244 | M | M.HpyS300IX (100% identity) | TCGA | M.Hpy99VII |
245 | putative | |||
245 | putative | |||
??? | R | HpyS300IIIP (100% identity) | CCGG | Hpy99VIIIP |
248 | M | M.HpyU418II (100% identity) | CCGG | M.Hpy99VIII |
249 | HEAT SHOCK PROTEIN | |||
429 | Outer membrane protein | |||
430 | M | M.HpyS300II (100% identity) | ATTAAT | M.Hpy99XIX |
431 | putative | |||
432 | putative | |||
433 | M | M.HpyS300ORF5785P (100% identity) | ACNGT | M.Hpy99ORF433P |
434 | R | putative | ACNGT | Hpy99ORF433P |
435 | TYPE II DNA MODIFICATION ENZYME | |||
434 | putative | |||
435 | M | M.HpyS300ORF5795P (100% identity) | ACGT | M.Hpy99XI |
436 | R | HpyS300ORF5795P (100% identity) | ACGT | Hpy99XIP |
437 | putative | |||
453 | DNA GYRASE SUBUNIT B | |||
454 | M | M.HpyNCI56VI (98% identity) | GTAC | M.Hpy99XII |
455 | R | HpyS300VIIIP (100% identity) | GTAC | Hpy99XIIP |
456 | Outer membrane protein | |||
611 | glycerol-3-phosphate dehydrogenase | |||
??? | RM | HpyS300ORF6730P (100% identity) | Hpy99ORF612P | |
614 | Outer membrane protein | |||
628 | putative | |||
629 | M | M.HpyS300IV (100% identity) | CCNNGG | M.Hpy99IV |
630 | R | HpyS300IVP (100% identity) | CCNNGG | Hpy99IV |
631 | putative | |||
753 | putative | |||
755 | R | HpyS300VP (100% identity) | CGWCG | Hpy99I |
756 | M | M.HpyS300V (100% identity) | CGWCG | M.Hpy99I |
757 | osmoprotection binding protein | |||
844 | FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN | |||
845 | R | HpyS300ORF7965P (100% identity) | GTNNAC | Hpy99ORF846P |
846 | M | M.HpyJ99bORF2440P (100% identity) | GTNNAC | M.Hpy99ORF846P |
847 | ATP-DEPENDENT HELICASE | |||
1011 | BIOTIN CARBOXYLASE | |||
1012 | M | M.HpyS300X (100% identity) | TCNNGA | M.Hpy99XVIII |
1013 | R | HpySP202XP (100% identity) | TCNNGA | Hpy99XVIIIP |
1014 | putative | |||
1130 | putative | |||
1131 | M | M.HpyS300I (99% identity) | CATG | M.Hpy99X |
1132 | putative | |||
1269 | CARBOXYL-TERMINAL PROTEASE | |||
1270 | R | HpyS300VIIP (100% identity) | GANTC | Hpy99IXP |
1271 | M | M.HpyS300VII (100% identity) | GANTC | M.Hpy99IX |
1272 | putative | |||
1441 | putative | |||
1442 | R | HpyS300ORF3160P (100% identity) | GAAGA | Hpy99ORF1442P |
1443 | TRANSCRIPTIONAL REGULATOR | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
1283 | TRANSCRIPTIONAL REGULATOR | |||
1284 | M | M.HpyS300ORF2305P (100% identity) | M.Hpy99ORF1284P | |
1285 | R | HpyS300ORF2305P (100% identity) | Hpy99ORF1284P | |
1286 | putative | |||
1295 | ENDONUCLEASE | |||
1296 | M | M.HpyU428ORF7410P (100% identity) | M.Hpy99ORF1296P | |
1297 | R | HpyS300ORF2380P (91% identity) | Hpy99ORF1296P | |
1298 | BIOTIN SYNTHETASE | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
461 | GLUTAMINE SYNTHETASE | |||
462 | R | HpyU408GmrSDP (91% identity) | Hpy99GmrSDP | |
463 | 50S RIBOSOMAL PROTEIN L9 |