Runella slithyformis DSM 19594 |
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Putative Runella slithyformis DSM 19594 RM systems
Ref: Lucas,S. et al. unpublished
REBASE ref # 15705
| Sequence length: | GenBank #: | |
| Chromosome: | 6,568,739 bp | CP002859 (NC_015703) |
| plasmid pRUNSL02: | 93,527 bp | CP002861 (NC_015704) |
| plasmid pRUNSL03: | 66,926 bp | CP002862 (NC_015694) |
REBASE acronym: Rsl19594
Org_num: 7224
All begin Runsl_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3342 | phospholipase D/transphosphatidylase | |||
| 3343 | S | S.SspSC414ORF4670P (52% identity) | S.Rsl19594ORF3344P | |
| 3344 | M | M.SspSC414ORF4670P (86% identity) | M.Rsl19594ORF3344P | |
| 3345 | R | Mda10076ORF605P (64% identity) | Rsl19594ORF3344P | |
| 3346 | integrase family protein | |||
| 3500 | fatty acid desaturase | |||
| 3501 | M | M.FauTH167ORF11925P (76% identity) | M.Rsl19594ORF3501P | |
| 3502 | S | S.MbaX1ORFFP (25% identity) | S1.Rsl19594ORF3501P | |
| 3503 | transposase | |||
| 3504 | S | S.Cbe6423ORF3328P (22% identity) | S2.Rsl19594ORF3501P | |
| 3505 | death-on-curing protein | |||
| 3506 | 178 aa hypothetical protein | |||
| 3507 | helix-turn-helix domain protein | |||
| 3508 | 146 aa hypothetical protein | |||
| 3509 | R | FauTH167ORF11925P (79% identity) | Rsl19594ORF3501P | |
| 3510 | 396 aa hypothetical protein | |||
| 3892 | 103 aa hypothetical protein | |||
| 3893 | M | M.Rsp15ORF8535P (49% identity) | M.Rsl19594ORF3893P | |
| 3894 | R | Esp11W3ORF20185P (74% identity) | Rsl19594ORF3893P | |
| 3895 | 130 aa hypothetical protein | |||
| 4459 | rifampin ADP-ribosyl transferase | |||
| 4460 | R | Fbr15ORF1800P (80% identity) | Rsl19594ORF4465P | |
| 4461 | AAA ATPase | |||
| 4462 | S | S.Fgi636ORF12255P (52% identity) | S.Rsl19594ORF4465P | |
| 4463 | 37 aa hypothetical protein | |||
| 4464 | DUF1016 domain-containing protein | |||
| 4465 | M | M.Rsp6061ORF1305P (82% identity) | M.Rsl19594ORF4465P | |
| 4466 | 550 aa hypothetical protein | |||
| 5270 | NUDIX hydrolase | |||
| 5271 | M | M.Pre8TI (88% identity) | M.Rsl19594ORF5271P | |
| 5272 | S | S1.FspCS20ORF100P (56% identity) | S1.Rsl19594ORF5271P | |
| 5273 | S | S.PspMTZ26ORF11450P (18% identity) | S2.Rsl19594ORF5271P | |
| 5274 | R | Pre8TIP (87% identity) | Rsl19594ORF5271P | |
| 5275 | protein of unknown function DUF45 | |||
| plasmid pRUNSL02 | ||||
| 5920 | protein of unknown function DUF45 | |||
| 5921 | R | HspAPR13ORF20905P (79% identity) | Rsl19594ORF5923P | |
| 5922 | S | S.HspAPR13ORF20905P (43% identity) | S.Rsl19594ORF5923P | |
| 5923 | M | M.HspAPR13ORF20905P (72% identity) | M.Rsl19594ORF5923P | |
| 5924 | heavy metal translocating P-type ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 938 | transcriptional regulator, LysR family | |||
| 939 | M | M.Rsp85ORF13790P (92% identity) | CCGG | M.Rsl19594ORF939P |
| 940 | 86 aa hypothetical protein | |||
| 1217 | 92 aa hypothetical protein | |||
| 1218 | M | M.RbiORF14054P (30% identity) | M1.Rsl19594ORF1218P | |
| 1219 | 470 aa hypothetical protein | |||
| 1220 | 85 aa hypothetical protein | |||
| 1221 | 128 aa hypothetical protein | |||
| 1222 | M | M.RspSP2ORF7270P (52% identity) | GGCC | M2.Rsl19594ORF1218P |
| 1223 | 76 aa hypothetical protein | |||
| 1852 | 115 aa hypothetical protein | |||
| 1853 | M | M.Psp326ORFDP (59% identity) | M.Rsl19594ORF1853P | |
| 1854 | 682 aa hypothetical protein | |||
| 3021 | 177 aa Conserved hypothetical protein CHP00701 | |||
| 3022 | R | FcoPf1ORF209P (63% identity) | Rsl19594ORF3022P | |
| 3023 | Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase | |||
| 3839 | 111 aa hypothetical protein | |||
| 3840 | RM | PmuE5AORF567P (81% identity) | Rsl19594ORF3840P | |
| 3841 | Site-specific DNA-methyltransferase | |||
| 3840 | helicase A859L | |||
| 3841 | RM | M1.CbaCB2ORF10725P (51% identity) | Rsl19594ORF3841P | |
| 3842 | type III restriction system methylase | |||
| 3841 | Site-specific DNA-methyltransferase | |||
| 3842 | RM | M1.BbaOmORF49P (82% identity) | Rsl19594ORF3842P | |
| 3843 | 5-nucleotidase | |||
| 4267 | transcriptional regulator, y4mF family | |||
| 4268 | RM | Eol17448ORF3192P (43% identity) | Rsl19594ORF4268P | |
| 4269 | 1173 aa hypothetical protein | |||
| 4278 | 1094 aa hypothetical protein | |||
| 4279 | M | M.Rsp85ORF2585P (82% identity) | M.Rsl19594ORF4279P | |
| 4281 | 342 aa hypothetical protein | |||
| 4282 | R | Bov926ORF6285P (68% identity) | Rsl19594ORF4279P | |
| 4283 | 80 aa hypothetical protein | |||
| 4414 | 67 aa hypothetical protein | |||
| 4415 | R | FspN2155ORFGP (68% identity) | GATC | Rsl19594ORF4415P |
| 4416 | Domain of unknown function DUF1801 | |||
| 5097 | magnesium transporter | |||
| 5098 | M | M.FmiSK8ORF7795P (86% identity) | CTGCAG | M.Rsl19594ORF5098P |
| 5099 | R | Esp427ORF11900P (82% identity) | CTGCAG | Rsl19594ORF5098P |
| 5100 | NmrA family protein | |||
| plasmid pRUNSL03 | ||||
| 5851 | 79 aa hypothetical protein | |||
| 5852 | M | M.SspTS118ORF23660P (65% identity) | CCWGG | M.Rsl19594ORF5852P |
| 5853 | R | SspTS118ORF23660P (68% identity) | CCWGG | Rsl19594ORF5852P |
| 5854 | 52 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 101 | DNA polymerase beta domain protein region | |||
| 102 | R | CspCBo1ORF18320P (56% identity) | Rsl19594ORF104P | |
| 103 | 129 aa hypothetical protein | |||
| 104 | M | M.Mph29WORFDP (37% identity) | M.Rsl19594ORF104P | |
| 105 | cyclic nucleotide-binding protein | |||
| 2424 | TonB-dependent receptor | |||
| 2425 | M | M.ScoHDE06ORF6050P (17% identity) | M.Rsl19594ORF2425P | |
| 2426 | transposase IS3/is911 family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3005 | dihydrolipoamide dehydrogenase | |||
| 3006 | R | 5-methylcytosine restriction system | Rsl19594McrCP | |
| 3007 | Ribosome maturation factor rimP | |||
| 5471 | 289 aa hypothetical protein | |||
| 5472 | R | FliBUZ3ORF107P (49% identity) | Rsl19594ORF5472P | |
| 5473 | alpha/beta hydrolase fold protein | |||