Helicobacter pylori 26695 |
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Putative Helicobacter pylori 26695 RM systems
Ref: Tomb,J.-F. et al. Nature 388 (6642), 539-547 (1997)
REBASE ref # 4797
Complete sequence: 1,667,867 bp
GenBank #: AE000511 (NC_000915)
REBASE acronym: HpyA
Org_num: 1521
All begin HP_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 461 | predicted coding region HP0461 | |||
| 462 | S | S.HpyS299ORF3810P (100% identity) | S.HpyAORF463P | |
| 463 | M | M.HpyS299ORF3810P (100% identity) | M.HpyAORF463P | |
| 464 | R | HpyS299ORF3810P (100% identity) | HpyAORF463P | |
| 465 | 631 aa conserved hypothetical protein | |||
| 789 | predicted coding region HP0789 | |||
| 790 | S | S.HpyS299IV (100% identity) | CTANNNNNNNNTGT | S.HpyAXIII |
| 791 | cadmium-transporting ATPase, P-type (cadA) | |||
| 847 | predicted coding region HP0847 | |||
| ??? | S | S.HpyRif2ORF4365P (100% identity) | S.HpyAORF848P | |
| 850 | type I restriction enzyme M protein (hsdM) | |||
| 1401 | 235 aa conserved hypothetical protein | |||
| 1402 | R | HpyS299ORF7180P (100% identity) | HpyAORF1403P | |
| 1403 | M | M.HpyS299ORF7180P (100% identity) | M.HpyAORF1403P | |
| 1404 | S | S.HpyRif2ORF7260P (100% identity) | S.HpyAORF1403P | |
| 1405 | predicted coding region HP1405 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 49 | predicted coding region HP0049 | |||
| 50 | M | M2.HpyS299IIIP (100% identity) | CCTC | M1.HpyAVI |
| 51 | M | M1.HpyS299III (100% identity) | CCTC | M2.HpyAVIP |
| 52 | R | HpyRif1ORF230P (80% identity) | CCTC | HpyAVIP |
| 53 | predicted coding region HP0053 | |||
| ??? | HNH endonuclease family protein | |||
| 53 | R | HpyS299VIIIP (100% identity) | CCTTC | HpyAV |
| 54 | M | M.HpyS299VIII (100% identity) | CCTTC | M.HpyAV |
| 55 | proline permease (putP) | |||
| 90 | malonyl coenzyme A-acyl carrier protein | |||
| 91 | R | HpyS299VP (100% identity) | GATC | HpyAIII |
| 92 | M | M.HpyS299V (100% identity) | GATC | M.HpyAIII |
| 93 | predicted coding region HP0093 | |||
| 259 | exonuclease VII, large subunit (xseA) | |||
| 260 | M | M.HpyS299VII (100% identity) | TCGA | M.HpyAX |
| 261 | predicted coding region HP0261 | |||
| 261 | predicted coding region HP0261 | |||
| 262 | R | HpyS299ORF4845P (100% identity) | CCGG | HpyAORF263P |
| 263 | M | M.HpyS299ORF4845P (100% identity) | CCGG | M.HpyAORF263P |
| 264 | ATP-dependent protease binding subunit (clpB) | |||
| 367 | predicted coding region HP0367 | |||
| 368 | R | predicted coding region HP0368 | TCNNGA | HpyAORF369P |
| ??? | M | M.HpyS299ORF4305P (100% identity) | TCNNGA | M.HpyAORF369P |
| 370 | biotin carboxylase (accC) | |||
| 477 | outer membrane protein (omp12) | |||
| 478 | M | M.HpyS299II (100% identity) | ATTAAT | M.HpyAVII |
| 479 | predicted coding region HP0479 | |||
| 480 | GTP-binding protein, fusA-homolog (yihK) | |||
| ??? | M | M.HpyRif2ORFEP (100% identity) | ACNGT | M.HpyAORF481P |
| 482 | R | HpyRif2ORFEP (100% identity) | ACNGT | HpyAORF481P |
| 483 | DNA methyltransferase | |||
| 482 | predicted coding region HP0482 | |||
| 483 | M | M.HpyS299ORF3700P (94% identity) | ACGT | M.HpyAORF483P |
| 484 | R | HpyS299ORF3700P (100% identity) | ACGT | HpyAORF483P |
| 485 | catalase-like protein | |||
| 501 | DNA gyrase, sub B (gyrB) | |||
| ??? | M | M.HpyRif2ORFDP (100% identity) | GTAC | M.HpyAORF502P |
| ??? | R | HpyS299ORF3600P (100% identity) | GTAC | HpyAORF502P |
| 506 | 403 aa conserved hypothetical secreted protein | |||
| 666 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
| 667 | RM | HpyCGRORF682AP (100% identity) | GGANNAG | HpyAXVIIIA |
| 668 | RM | HpyCGRORF682BP (100% identity) | GGANNAG | HpyAXVIIIB |
| 669 | M | HpyP79ORF405P (99% identity) | GGANNAG | M.HpyAXVIII |
| 670 | predicted coding region HP0670 | |||
| 908 | flagellar hook (flgE) | |||
| 909 | R | HpyS299ORF1570P (100% identity) | GTNNAC | HpyAIXP |
| 910 | M | M.HpyS299ORF1570P (100% identity) | GTNNAC | M.HpyAIXP |
| 911 | rep helicase, single-stranded DNA-dependent | |||
| 1120 | predicted coding region HP1120 | |||
| 1121 | M | M.HpyS299ORF435P (100% identity) | GCGC | M.HpyAVIII |
| 1122 | predicted coding region HP1122 | |||
| 1207 | predicted coding region HP1207 | |||
| 1208 | M | M.HpyS299I (100% identity) | CATG | M.HpyAI |
| 1209 | R | HpyRif2ORF6260P (100% identity) | CATG | HpyAIP |
| 1210 | serine acetyltransferase (cysE) | |||
| 1350 | protease | |||
| 1351 | R | HpyS299ORF8615P (100% identity) | GANTC | HpyAIV |
| 1352 | M | M.HpyS299ORF8665P (100% identity) | GANTC | M.HpyAIV |
| ??? | N-6 DNA methylase | |||
| 1352 | adenine specific DNA methyltransferase (HINFIM) | |||
| ??? | RM | HpyP22ORFWP (95% identity) | HpyAORF1353P | |
| 1355 | nicotinate-nucleotide pyrophosphorylase (nadC) | |||
| 1352 | adenine specific DNA methyltransferase (HINFIM) | |||
| ??? | RM | HpyRif2ORF6990P (99% identity) | HpyAXVIP | |
| 1355 | nicotinate-nucleotide pyrophosphorylase (nadC) | |||
| 1365 | response regulator | |||
| 1366 | R | HpyS299ORF7360P (100% identity) | GAAGA | HpyAII |
| 1367 | M | M2.HpyS299ORF7360P (100% identity) | GAAGA | M1.HpyAII |
| 1368 | M | M2.HpySWT04XIII (100% identity) | GAAGA | M2.HpyAII |
| ??? | adenine-specific DNA methylase | |||
| 1470 | DNA polymerase I (polA) | |||
| 1471 | S | S.HpyRif2ORF7625P (100% identity) | S.HpyAORF1472P | |
| 1472 | RM | HpyS299ORF6805P (100% identity) | HpyAORF1472P | |
| 1473 | predicted coding region HP1473 | |||
| 1516 | predicted coding region HP1516 | |||
| 1517 | RM | HpyS299ORF6590P (100% identity) | GCGTA | HpyAXIV |
| 1518 | predicted coding region HP1518 | |||
| 1536 | predicted coding region HP1536 | |||
| 1537 | R | HpyS299ORF6490P (100% identity) | TGCA | HpyAORF1537P |
| 1538 | cytochrome c1 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 591 | ferredoxin oxidoreductase, gamma subunit | |||
| 592 | R | HpyS299VIP (100% identity) | GCAG | HpyAXIP |
| 593 | M | M.HpyS299VI (95% identity) | GCAG | M.HpyAXI |
| 594 | predicted coding region HP0594 | |||
| 1368 | type IIS restriction enzyme M2 protein (mod) | |||
| ??? | M | M.HpyRif2ORF7075P (100% identity) | TCAG | M.HpyAXVII |
| 1371 | R | HpyS299ORF7350P (100% identity) | TCAG | HpyAXVIIP |
| 1372 | rod shape-determining protein (mreC) | |||
| 1520 | predicted coding region HP1520 | |||
| 1521 | R | HpyS299ORF6570P (100% identity) | HpyAORF1522P | |
| 1522 | M | M.HpyRif2ORFBP (100% identity) | M.HpyAORF1522P | |
| 1523 | DNA recombinase (recG) | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 512 | glutamine synthetase (glnA) | |||
| 513 | R | HpyS299GmrSD2P (100% identity) | HpyAGmrSDP | |
| 514 | ribosomal protein L9 (rpl9) | |||