Ref: Copeland,A. et al. unpublished

REBASE ref # 12931

Sequence length:GenBank #:
Chromosome: 4,985,871 bp CP000509 (NC_008699)
plasmid pNOCA01: 307,814 bp CP000508 (NC_008697)

REBASE acronym: NspJS

Org_num: 4399

 

All begin Noca_

Type I
ORF Gene Most similar Specificity Name
 
Chromosome
 
1103 protein of unknown function DUF1524 RloF
1104 M M.AspZJ34ORFCP (74% identity) M.NspJSORF1104P
??? S S.MacPHSORF9524P (56% identity) S.NspJSORF1104P
1107 R DspDHT3ORF2695P (71% identity) NspJSORF1104P
1108 68 aa conserved hypothetical protein
Type II
ORF Gene Most similar Specificity Name
 
Chromosome
 
??? restriction endonuclease
1587 M M.AspJ349ORFAP (74% identity) M.NspJSORF1587P
??? type III restriction enzyme, res subunit
 
1587 type II restriction-modification system
??? RM NspJSORF4072P (100% identity) NspJSORF1588P
1590 phage integrase family protein
 
2282 119 aa hypothetical protein
2283 V T/G mismatch-specific endonuclease V.NspJSORF2284P
2284 M M.Sma45390ORF451P (56% identity) CCGCGG M.NspJSORF2284P
2285 109 aa hypothetical protein
 
plasmid pNOCA01
 
4769 ATPase associated with various cellular
4770 RM Nsp3366ORF18370P (41% identity) NspJSORF4770P
4771 helicase domain protein
 
4775 97 aa hypothetical protein
4776 M M.Mmu2099ORFCP (75% identity) M.NspJSORF4776P
4777 70 aa hypothetical protein
 
4783 264 aa hypothetical protein
4784 RM Nsp1495ORFAP (74% identity) NspJSORF4784P
4785 helicase domain protein
Type III
ORF Gene Most similar Specificity Name
 
Chromosome
 
1084 307 aa hypothetical protein
1085 M M.Tph30849ORF920P (53% identity) M.NspJSORF1085P
1086 R LspC296ORF18150P (58% identity) NspJSORF1085P
1087 97 aa hypothetical protein
 
3706 Diacylglycerol O-acyltransferase
??? M M.Nsp117ORF7970P (46% identity) M.NspJSORF3707P
3709 peptidase S15
Type IV
ORF Gene Most similar Specificity Name
 
Chromosome
 
1102 ATP-dependent exoDNAse (exonuclease V) alpha
1103 R MspTS1GmrSD2P (63% identity) NspJSGmrSDP
1104 type I restriction-modification system, M
 
1585 374 aa hypothetical protein
??? R restriction endonuclease NspJSMrrP
1587 type II restriction-modification system
 
3808 331 aa hypothetical protein
3809 R Nme15243ORF17735P (64% identity) NspJSORF3809P
3810 Exonuclease, RNase T and DNA polymerase III
 
plasmid pNOCA01
 
4767 317 aa conserved hypothetical protein
4768 R Nsp3366McrCP (51% identity) NspJSMcrCP
4769 R Nsp3366McrBP (42% identity) NspJSMcrBP
4770 type II DNA modification enzyme