Nocardioides species JS614 |
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Putative Nocardioides species JS614 RM systems
Ref: Copeland,A. et al. unpublished
REBASE ref # 12931
| Sequence length: | GenBank #: | |
| Chromosome: | 4,985,871 bp | CP000509 (NC_008699) |
| plasmid pNOCA01: | 307,814 bp | CP000508 (NC_008697) |
REBASE acronym: NspJS
Org_num: 4399
All begin Noca_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1103 | protein of unknown function DUF1524 RloF | |||
| 1104 | M | M.AspZJ34ORFCP (74% identity) | M.NspJSORF1104P | |
| ??? | S | S.Ssc01786ORF20320P (35% identity) | S.NspJSORF1104P | |
| 1107 | R | DspDHT3ORF2695P (71% identity) | NspJSORF1104P | |
| 1108 | 68 aa conserved hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| ??? | restriction endonuclease | |||
| 1587 | M | M.AspJ349ORFAP (74% identity) | M.NspJSORF1587P | |
| ??? | type III restriction enzyme, res subunit | |||
| 1587 | type II restriction-modification system | |||
| ??? | RM | NspJSORF4072P (100% identity) | NspJSORF1588P | |
| 1590 | phage integrase family protein | |||
| 2282 | 119 aa hypothetical protein | |||
| 2283 | V | T/G mismatch-specific endonuclease | V.NspJSORF2284P | |
| 2284 | M | M.Sma45390ORF451P (56% identity) | CCGCGG | M.NspJSORF2284P |
| 2285 | 109 aa hypothetical protein | |||
| plasmid pNOCA01 | ||||
| 4769 | ATPase associated with various cellular | |||
| 4770 | RM | Nsp3366ORF18370P (41% identity) | NspJSORF4770P | |
| 4771 | helicase domain protein | |||
| 4775 | 97 aa hypothetical protein | |||
| 4776 | M | M.Mmu2099ORFCP (75% identity) | M.NspJSORF4776P | |
| 4777 | 70 aa hypothetical protein | |||
| 4783 | 264 aa hypothetical protein | |||
| 4784 | RM | Nsp1495ORFAP (74% identity) | NspJSORF4784P | |
| 4785 | helicase domain protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1084 | 307 aa hypothetical protein | |||
| 1085 | M | M.PspP24ORF16190P (31% identity) | M.NspJSORF1085P | |
| 1086 | R | Gho9ORF21400P (59% identity) | NspJSORF1085P | |
| 1087 | 97 aa hypothetical protein | |||
| 3706 | Diacylglycerol O-acyltransferase | |||
| ??? | M | M.Nsp117ORF7970P (44% identity) | M.NspJSORF3707P | |
| 3709 | peptidase S15 | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1102 | ATP-dependent exoDNAse (exonuclease V) alpha | |||
| 1103 | R | Jli33X1GmrSDP (56% identity) | NspJSGmrSDP | |
| 1104 | type I restriction-modification system, M | |||
| 1585 | 374 aa hypothetical protein | |||
| ??? | R | MspXT11MrrP (56% identity) | NspJSMrrP | |
| 1587 | type II restriction-modification system | |||
| 3808 | 331 aa hypothetical protein | |||
| 3809 | R | Nme15243ORF17735P (64% identity) | NspJSORF3809P | |
| 3810 | Exonuclease, RNase T and DNA polymerase III | |||
| plasmid pNOCA01 | ||||
| 4767 | 317 aa conserved hypothetical protein | |||
| 4768 | R | Nsp3366McrCP (51% identity) | NspJSMcrCP | |
| 4769 | R | Nsp3366McrBP (42% identity) | NspJSMcrBP | |
| 4770 | type II DNA modification enzyme | |||