Escherichia coli APEC O1 |
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Putative Escherichia coli APEC O1 RM systems
Ref: Johnson,T.J. et al. Antimicrob. Agents Chemother. 50 (11), 3929-3933 (2006)
REBASE ref #
| Sequence length: | GenBank #: | |
| Chromosome: | 5,082,025 bp | CP000468 (NC_008563) |
| plasmid pAPEC-O1-R: | 241,387 bp | DQ517526 (NC_009838) |
REBASE acronym: EcoAPEC
Org_num: 4445
All begin APECO1_, APECO1_O1R
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2079 | 132 aa conserved hypothetical protein | |||
| 2078 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoAPECORF2077P |
| 2077 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoAPECORF2077P |
| 2076 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoAPECORF2077P |
| 2075 | methylated adenine and cytosine restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 236 | 146 aa conserved hypothetical protein | |||
| 237 | M | M.EcoS88ORF1179P (100% identity) | GATC | M.EcoAPECORF237P |
| 238 | 127 aa conserved hypothetical protein | |||
| 387 | cryptic prophage CP-933M antitermination protein | |||
| 388 | M | M.SboBSORF1444P (100% identity) | M.EcoAPECORF388P | |
| 389 | lambdoid prophage DLP12 lysis protein S-like | |||
| 996 | conserved predicted inner membrane protein | |||
| 997 | V | V.SflC32DcmP (74% identity) | V.EcoAPECDcmP | |
| 998 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoAPECDcmP |
| 999 | 231 aa conserved hypothetical protein | |||
| 4023 | 99 aa hypothetical protein | |||
| 4022 | M | M.PmeBin470ORFBP (99% identity) | GATC | M.EcoAPECORF4022P |
| 4020 | integrase-like protein | |||
| 3879 | 108 aa conserved hypothetical protein | |||
| 3878 | M | M.Ecoppa1ORF22275P (100% identity) | GATC | M.EcoAPECORF3878P |
| 3877 | 162 aa conserved hypothetical protein | |||
| 3177 | DNA-binding protein | |||
| 3176 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoAPECORF3176P |
| 3175 | acrEF/envCD operon repressor | |||
| 3077 | D-ribulose-5-phosphate 3-epimerase | |||
| 3076 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoAPECDamP |
| 3075 | 428 aa conserved hypothetical protein | |||
| plasmid pAPEC-O1-R | ||||
| 126 | 439 aa conserved hypothetical protein | |||
| 127 | M | M.EcoGDZ13ORFGP (100% identity) | CCWGG | M.EcoAPECORFAP |
| 128 | nuclease | |||
| 209 | 202 aa conserved hypothetical protein | |||
| 210 | M | M.YpsF1ORFBP (100% identity) | M.EcoAPECORFBP | |
| 211 | 101 aa hypothetical protein | |||
| 218 | DNA-binding plasmid partitioning protein | |||
| 219 | M | M.YpsF1ORFDP (100% identity) | M.EcoAPECORFDP | |
| 220 | 285 aa conserved hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3912 | 257 aa conserved hypothetical protein | |||
| 3911 | R | EcoW224NGmrSDP (92% identity) | EcoAPECGmrSD | |
| 3910 | tail fiber protein | |||
| 2076 | DNA methylase R | |||
| 2075 | R | EcosS1MrrP (100% identity) | EcoAPECMrrP | |
| 2074 | GTPase | |||