Burkholderia pseudomallei SiteE-6D |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Burkholderia pseudomallei SiteE-6D RM systems
Ref: Schully,K.L. et al. unpublished
REBASE ref # 38603
| Sequence length: | GenBank #: | |
| chromosome 1: | 4,046,204 bp | CP151804 |
| chromosome 2: | 3,215,467 bp | CP151805 |
REBASE acronym: BpsD
Org_num: 77153
All begin AAFM48_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 6500 | type VI immunity family protein | |||
| 6505 | S | S.BpsMSIII (100% identity) | CCANNNNNNNNRTGCC | S.BpsDORF6510P |
| 6510 | M | M.BpsMSIII (99% identity) | CCANNNNNNNNRTGCC | M.BpsDORF6510P |
| 6515 | R | BpsMSIIIP (99% identity) | CCANNNNNNNNRTGCC | BpsDORF6510P |
| 6520 | GTP-binding protein | |||
| 9755 | 232 aa hypothetical protein | |||
| 9760 | R | BpsJORF9570P (100% identity) | BpsDORF9775P | |
| 9765 | S | S.BpsJORF9570P (23% identity) | S2.BpsDORF9775P | |
| 9770 | S | S.BpsJORF9570P (57% identity) | S1.BpsDORF9775P | |
| 9775 | M | M.BpsJORF9570P (100% identity) | M.BpsDORF9775P | |
| 9780 | 612 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 8220 | 276 aa hypothetical protein | |||
| 8225 | R | Bgl9475SspFP (48% identity) | BpsDSspFP | |
| 8230 | 232 aa hypothetical protein | |||
| 8235 | R | Bgl9475SspGP (56% identity) | BpsDSspGP | |
| ??? | 158 aa hypothetical protein | |||
| 8240 | 83 aa hypothetical protein | |||
| 8245 | 44 aa hypothetical protein | |||
| 8250 | R | Bgl9475SspHP (5% identity) | BpsDSspHP | |
| 8255 | 179 aa hypothetical protein | |||
| 8260 | 514 aa hypothetical protein | |||
| 8265 | 153 aa hypothetical protein | |||
| 8270 | 349 aa hypothetical protein | |||
| 8275 | FtsK/SpoIIIE domain-containing protein | |||
| 8280 | DUF262 domain-containing protein | |||
| 8285 | 106 aa hypothetical protein | |||
| 8290 | SIR2 family protein | |||
| 8295 | 487 aa hypothetical protein | |||
| 8300 | M | M.Bgl9475SspDP (93% identity) | M.BpsDSspDP | |
| 8305 | M | M.Bgl9475SspCP (73% identity) | M.BpsDSspCP | |
| 8310 | 254 aa hypothetical protein | |||
| 8315 | M | M.Bvi867SspBP (98% identity) | M.BpsDSspBP | |
| 8320 | amino acid permease | |||
| 8225 | 320 aa hypothetical protein | |||
| 8230 | R | Bgl9475SspFP (29% identity) | BpsDSspF2P | |
| 8235 | 354 aa hypothetical protein | |||
| 8235 | 354 aa hypothetical protein | |||
| ??? | R | Bgl9475SspGP (21% identity) | BpsDSspG2P | |
| 8240 | 83 aa hypothetical protein | |||
| ??? | 158 aa hypothetical protein | |||
| 8240 | R | Bgl9475SspGP (15% identity) | BpsDSspG3P | |
| 8245 | 44 aa hypothetical protein | |||
| 8250 | 142 aa hypothetical protein | |||
| 8255 | R | Bgl9475SspHP (8% identity) | BpsDSspH2P | |
| 8260 | 514 aa hypothetical protein | |||
| 8255 | 179 aa hypothetical protein | |||
| 8260 | R | Bgl9475SspHP (26% identity) | BpsDSspH3P | |
| 8265 | 153 aa hypothetical protein | |||
| 8260 | 514 aa hypothetical protein | |||
| 8265 | R | Bgl9475SspHP (8% identity) | BpsDSspH4P | |
| 8270 | 349 aa hypothetical protein | |||
| 8265 | 153 aa hypothetical protein | |||
| 8270 | R | Bgl9475SspHP (15% identity) | BpsDSspH5P | |
| 8275 | FtsK/SpoIIIE domain-containing protein | |||
| 8270 | 349 aa hypothetical protein | |||
| 8275 | R | Bgl9475SspHP (18% identity) | BpsDSspH6P | |
| 8280 | DUF262 domain-containing protein | |||
| 8305 | ATP-binding protein | |||
| 8310 | M | M.Bgl9475SspCP (17% identity) | M.BpsDSspC2P | |
| 8315 | DUF4007 family protein | |||
| chromosome 2 | ||||
| 22705 | tryptophan synthase subunit alpha | |||
| 22710 | M | M.BspBGKORF4324P (100% identity) | GTWWAC | M.BpsDORF22710P |
| 22715 | tryptophan synthase subunit beta | |||
| 28975 | site-specific integrase | |||
| ??? | R | BpsJORF28050P (95% identity) | BpsDORF28995P | |
| ??? | M | M.BpsMSORFAP (99% identity) | M.BpsDORF28995P | |
| 29010 | IS3-like element IS407 family transposase | |||
| 29015 | V | V.BpsMSORFAP (100% identity) | V.BpsDORF28995P | |
| 29020 | integrase core domain-containing protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 6880 | porin | |||
| 6885 | R | BpsJORF6790P (99% identity) | CACAG | BpsDORF6890P |
| 6890 | M | M.BpsJORF6790P (98% identity) | CACAG | M.BpsDORF6890P |
| 6895 | porin | |||