Escherichia coli 1002W03 |
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Putative Escherichia coli 1002W03 RM systems
Ref: Gomi,R. unpublished
REBASE ref # 32053
| Sequence length: | GenBank #: | |
| Chromosome: | 4,828,883 bp | CP147056 |
| plasmid p1002W03_1: | 90,105 bp | CP147055 |
| plasmid p1002W03_2: | 43,766 bp | CP147054 |
REBASE acronym: EcoW03
Org_num: 77204
All begin WAZ54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13785 | SIR2 family protein | |||
| 13790 | S | S.EcoRb23ORF7360P (100% identity) | TGANNNNNNCTTT | S.EcoW03ORF13795P |
| 13795 | M | M.EcoRb23ORF7360P (100% identity) | TGANNNNNNCTTT | M.EcoW03ORF13795P |
| 13800 | R | EcoRb23ORF7360P (100% identity) | TGANNNNNNCTTT | EcoW03ORF13795P |
| 13805 | immunity protein YezG family protein | |||
| 14305 | 237 aa hypothetical protein | |||
| 14310 | R | EcoRb23ORF8410P (100% identity) | EcoW03ORF14320P | |
| 14315 | S | S.EcoZ247ORF19790P (100% identity) | S.EcoW03ORF14320P | |
| 14320 | M | M.EcoSCU115ORF11395P (100% identity) | M.EcoW03ORF14320P | |
| 14325 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1030 | drug/metabolite exporter YedA | |||
| 1035 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoW03DcmP |
| 1040 | M | M.EcoSCU121DcmP (100% identity) | CCWGG | M.EcoW03DcmP |
| 1045 | phosphohydrolase | |||
| 4625 | replication endonuclease | |||
| 4630 | M | M.Eco3320ORF5760P (100% identity) | GATC | M.EcoW03ORF4630P |
| 4635 | TraR/DksA family transcriptional regulator | |||
| 8035 | DNA-binding transcriptional regulator Fis | |||
| 8040 | M | M.EcoRb23ORF41040P (100% identity) | ATGCAT | M.EcoW03ORF8040P |
| 8045 | DUF2556 family protein | |||
| 8630 | ribulose-phosphate 3-epimerase | |||
| 8635 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoW03DamP |
| 8640 | cell division protein DamX | |||
| 14065 | peptidase | |||
| 14070 | R | EcoSCU121ORF22115P (100% identity) | EcoW03ORF14070P | |
| 14075 | HNH endonuclease | |||
| 18565 | DUF3850 domain-containing protein | |||
| 18570 | M | M.EcoSCU121ORF17370P (100% identity) | GATC | M.EcoW03ORF18570P |
| 18575 | replication endonuclease | |||
| 19540 | recombination protein NinB | |||
| 19545 | M | M.Ecocs03ORF11080P (74% identity) | GATC | M.EcoW03ORF19545P |
| 19550 | NinE family protein | |||
| plasmid p1002W03_1 | ||||
| 655 | 73 aa hypothetical protein | |||
| 660 | M | M.SflP099ORF24190P (100% identity) | M.EcoW03ORF660P | |
| 665 | 103 aa hypothetical protein | |||
| plasmid p1002W03_2 | ||||
| 135 | IS1 family transposase | |||
| 140 | M | M.Sen8b1ORF15518P (100% identity) | CCWGG | M.EcoW03ORF140P |
| 145 | R | Ssp3CORF24390P (100% identity) | CCWGG | EcoW03ORF140P |
| 150 | recombinase family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14320 | class I SAM-dependent DNA methyltransferase | |||
| ??? | R | EcoRb23GmrSDP (100% identity) | EcoW03GmrSDP | |
| 14335 | cell filamentation protein Fic | |||