Edwardsiella tarda GT88 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Edwardsiella tarda GT88 RM systems
Ref: Leung,K.Y. and Zhuang,M. unpublished
REBASE ref # 37223
| Sequence length: | GenBank #: | |
| Chromosome: | 3,627,665 bp | CP099739 |
| plasmid unnamed2: | 95,674 bp | CP099741 |
REBASE acronym: Eta88
Org_num: 69523
All begin NHU85_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1925 | AAA family ATPase | |||
| 1930 | R | EtaSC002ORF2160P (99% identity) | Eta88ORF1940P | |
| 1935 | S | S.KvaZH07ORF24095P (59% identity) | S.Eta88ORF1940P | |
| 1940 | M | M.Eta370II (97% identity) | M.Eta88ORF1940P | |
| 1945 | AAA domain-containing protein | |||
| 6605 | 138 aa hypothetical protein | |||
| 6610 | M | M.CfrC16ORF13960P (98% identity) | M.Eta88ORF6610P | |
| 6615 | S | S.Elu11894ORF13645P (83% identity) | S.Eta88ORF6610P | |
| 6620 | R | EcoL73ORF9840P (97% identity) | Eta88ORF6610P | |
| 6625 | M48 family metallopeptidase | |||
| 6655 | AAA family ATPase | |||
| 6660 | R | Eta2034ORFBP (98% identity) | Eta88ORF6660P | |
| ??? | S | S.EspC2ORFAP (22% identity) | S.Eta88ORF6660P | |
| 6670 | 94 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1060 | SPOR domain-containing protein | |||
| 1065 | M | M.Eta2034DamP (100% identity) | GATC | M.Eta88DamP |
| 1070 | ribulose-phosphate 3-epimerase | |||
| plasmid unnamed2 | ||||
| 17150 | 111 aa hypothetical protein | |||
| 17155 | M | M.Epi12001ORF17745P (100% identity) | M.Eta88ORF17155P | |
| 17160 | DUF1380 domain-containing protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9635 | DNA repair protein RadC | |||
| 9640 | R | AhyD4ORF23035P (88% identity) | Eta88ORF9645P | |
| 9645 | M | M.PspH71ORF10060P (32% identity) | M.Eta88ORF9645BP | |
| 9650 | IS5-like element ISKpn26 family transposase | |||
| 9655 | M | M.PspH71ORF10060P (27% identity) | M.Eta88ORF9645AP | |
| 9660 | IS5-like element ISKpn26 family transposase | |||
| 14705 | 302 aa hypothetical protein | |||
| 14710 | M | M.Kpn80023ORFAP (99% identity) | CTSAG | M.Eta88ORF14710P |
| 14715 | R | Eas3ORF15395P (97% identity) | CTSAG | Eta88ORF14710P |
| 14720 | shufflon system plasmid conjugative transfer | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1915 | 205 aa hypothetical protein | |||
| 1920 | R | Eta10396McrCP (98% identity) | Eta88McrC2P | |
| 1925 | R | Eta10396McrBP (99% identity) | Eta88McrB2P | |
| 1930 | DEAD/DEAH box helicase family protein | |||
| 6645 | IS3 family transposase | |||
| 6650 | R | Eta2034McrCP (90% identity) | Eta88McrCP | |
| 6655 | R | Eta2034McrBP (98% identity) | Eta88McrBP | |
| 6660 | HsdR family type I site-specific | |||